Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2084
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 31 0.80
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 30 1.4
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 3.2
10_08_0642 - 19525774-19526554,19526657-19527075 29 4.2
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 29 4.2
04_04_0393 - 24894170-24894676,24895956-24896627,24897720-248979... 28 5.6
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 28 7.4
11_01_0317 - 2365493-2365786,2365825-2365953 28 7.4
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 7.4
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 7.4
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323 27 9.8
04_04_0663 + 27058470-27059033,27059355-27059972 27 9.8
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/75 (22%), Positives = 30/75 (40%)
Frame = -1
Query: 359 RQSDWHVKLVQFLSSLFKRPYVIHEK*QWNXXXXXXXXXXRKQHPSPVRHFGYQRNSANF 180
R + W V V + R YVI+ Q+ + PS +R++G + N+
Sbjct: 355 RNTRWGVSNVGIFNDASSRNYVINSSQQFQNTLDSELFQTARMSPSSLRYYGLGLENGNY 414
Query: 179 XRDISYIE*LYVSNK 135
+ + E Y +K
Sbjct: 415 SVKLQFAEFAYPDSK 429
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -2
Query: 514 VLASNSASSVAIRRRNQRVSAVLCWNMNCSIAFRAPSGVLPAPRVSSFRISRGKVTGML 338
V+A N+ S++A + R A C C + + +GV+P P V + +S+ V ++
Sbjct: 146 VMAVNARSTLAAVKHAARAMAPRC--SGCVLCTSSGAGVIPVPAVPVYSVSKATVIAIV 202
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 219 WTWMLFSALFGAVSALTVPLLLLMYYVRPFEKRTQELDQFNMP---VTLPLEILNELTRG 389
W W+ F A+ G L + Y+RP+ Q + + + L EI+ ++
Sbjct: 762 WYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLS 821
Query: 390 AGST 401
+GST
Sbjct: 822 SGST 825
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 366 ILNELTRGAGSTPEGALNAMLQFIFQQSTADTRWLRRRMATELAELLA 509
IL ++RG S P+G +++ + S A T + +R TEL +LL+
Sbjct: 298 ILGCVSRGPSSLPQGVVSSDEDYFLNNSIASTVFTEKR-KTELHQLLS 344
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 171 ISXEISRIPLVAKMPDWTWMLFS 239
I +IS L+ K+PDW W FS
Sbjct: 194 IEFDISSTGLMGKIPDWFWSTFS 216
>04_04_0393 -
24894170-24894676,24895956-24896627,24897720-24897956,
24898852-24899388,24899612-24899662,24900756-24900767
Length = 671
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -2
Query: 454 AVLCWNMNCSIAFRAPSGVLPAPRVSSFRISRGKVTGMLNWSSS*VLFSNGRT*YMRSNS 275
A+ CW +NC F +P G+ + R+S ++ + G S+ F G + +N
Sbjct: 340 ALECWRINCDFHF-SP-GLTVSTRLSIAGVAHWRAGGHTIGSAHCTTF--GERFRVDANG 395
Query: 274 GTVSADTAPNS 242
TV AD A N+
Sbjct: 396 STVPADAAMNA 406
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 180 EISRIPLVAKMPDWTWMLFSAL 245
EIS + K+PDW W FS L
Sbjct: 691 EISNTGIKDKLPDWFWTTFSKL 712
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 452 SALLEYELQHRVQSALGSAAGSTCKLVQNFQRQSDWHVKLV 330
SA L EL+H+ GS G K+VQ ++R+ HV+ +
Sbjct: 31 SAALSTELRHKYNVVRGSYKGREGKVVQVYRRRWVIHVERI 71
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 219 WTWMLFSALFGAVSALTVPLLLLMYYVRPFEKRTQELDQ 335
W W+ ALFG V + + + Y++P K Q L +
Sbjct: 798 WYWIGVGALFGYVIVFNILFTIALGYLKPSGKAQQILSE 836
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Frame = -2
Query: 556 KERSVRDSNIFPE-DVLASNSASSVAIRRRNQRVSAVLCWNMNCSI----------AFRA 410
+ RSV D + P +LA + + S RN RVS +N ++ A RA
Sbjct: 814 ESRSVHDKTLSPSVPMLAPSVSDSSHHEIRNPRVSG---YNAGFTVPTERPIYGPSAPRA 870
Query: 409 PSGVLPAPRVSSFR 368
P G+LP P VS+ R
Sbjct: 871 PQGILPCPPVSAHR 884
>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
Length = 905
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 180 EISRIPLVAKMPDWTWMLFSAL 245
E+SR + +K+PDW W S +
Sbjct: 473 ELSRAQIKSKLPDWLWNFSSTI 494
>04_04_0663 + 27058470-27059033,27059355-27059972
Length = 393
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 303 PFEKRTQELDQFNMPVTLPLEILNELT 383
P +K TQE+ Q +P +P + N+L+
Sbjct: 103 PVDKSTQEVPQNQLPTQIPQSVQNQLS 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,996
Number of Sequences: 37544
Number of extensions: 340500
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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