Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2084
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 34 0.076
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 34 0.076
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 28 5.0
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 28 5.0
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 28 5.0
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 27 8.7
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 27 8.7
U50191-7|AAK31555.2| 454|Caenorhabditis elegans Hypothetical pr... 27 8.7
U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical pr... 27 8.7
U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 27 8.7
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 27 8.7
AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 27 8.7
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 34.3 bits (75), Expect = 0.076
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -2
Query: 553 ERSVRDSNIFPEDVLASNSASSVAIRRRNQRVSAVLCWNMNCSIAFRAPSGVLPAP---R 383
E + N+F +VLA N+ S Q +S C++ NC+I F AP+ V R
Sbjct: 146 EDVAKADNVFLIEVLARNADKSAV-----QVISQQWCYSSNCNITFNAPTEVSSFDVRLR 200
Query: 382 VSSFRISRGKVTGMLNWS 329
VS+F S G+V G +N+S
Sbjct: 201 VSTFD-SNGQVGG-INFS 216
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 34.3 bits (75), Expect = 0.076
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = -2
Query: 553 ERSVRDSNIFPEDVLASNSASSVAIRRRNQRVSAVLCWNMNCSIAFRAPSGVLPAP---R 383
E + N+F +VLA N+ S Q +S C++ NC+I F AP+ V R
Sbjct: 146 EDVAKADNVFLIEVLARNADKSAV-----QVISQQWCYSSNCNITFNAPTEVSSFDVRLR 200
Query: 382 VSSFRISRGKVTGMLNWS 329
VS+F S G+V G +N+S
Sbjct: 201 VSTFD-SNGQVGG-INFS 216
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 919 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 956
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 959 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 996
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 1020 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 1057
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 919 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 956
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 959 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 996
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 1020 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 1057
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 LCLR*LFHCYF--SCITYGRLKRELKNWTNLTCQSLCL 360
L L L HCY T L EL NW+N TC +L +
Sbjct: 959 LSLELLDHCYHVDDAQTLQLLTYELSNWSNETCLALAV 996
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 553 ERSVRDSNIFPEDVLASNSASSVAIRRRNQ--RVSAVLCWNMNCSIAFRAPSGVLPAPRV 380
++ V +SN F D L +S+SS + + +++ N++ + APS +P P V
Sbjct: 436 KKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGNLDTPSSSAAPSSYIPRPVV 495
Query: 379 SS 374
S+
Sbjct: 496 ST 497
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 553 ERSVRDSNIFPEDVLASNSASSVAIRRRNQ--RVSAVLCWNMNCSIAFRAPSGVLPAPRV 380
++ V +SN F D L +S+SS + + +++ N++ + APS +P P V
Sbjct: 452 KKPVNNSNPFISDPLTPSSSSSSSSHNLSHVTKITVGTIGNLDTPSSSAAPSSYIPRPVV 511
Query: 379 SS 374
S+
Sbjct: 512 ST 513
>U50191-7|AAK31555.2| 454|Caenorhabditis elegans Hypothetical
protein T14B4.9 protein.
Length = 454
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 502 NSASSVAIRRRNQRVSAVLCWNMNCSIAFRAPSGVLPAPRVSSFRISRGKVTGMLN 335
+ A+ + I + R+ L W++ FR S + S+ R+S+G V G L+
Sbjct: 221 DGANDIDIDKEFGRIDESLKWDLKTLRLFRDESALNSTYLNSTLRVSKGSVQGSLS 276
>U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical
protein C07D10.1 protein.
Length = 327
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 487 PNL-LSCLLKHLQERYLNL*RYVLWEVGTEFPSINNLHLLTANLE 618
PNL +S +LK L ER+ NL R+ L TEF SI + ++L+
Sbjct: 137 PNLKISSILK-LLERFPNLIRFSLSHCFTEFVSIGEIFKKLSHLQ 180
>U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical
protein R151.6 protein.
Length = 237
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 536 ISNATFFGKLALSFLVSTIFTYLRRIWKEXGA 631
I++ FFG SFL + IFTY + E G+
Sbjct: 56 ITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGS 87
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 249 GAVSALTVPLLLLMYYVRPFEKRTQELDQFNMPVTLPLEILNELTRGAGSTP 404
G + L + + +++Y+RPF +R + + ++ + L L L L + P
Sbjct: 664 GDIYQLAMCIYQILFYMRPFAERQESIKVYSGEIFLKLPELAHLLSSQSTAP 715
>AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH
oxidoreductase complexI subunit protein.
Length = 237
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 536 ISNATFFGKLALSFLVSTIFTYLRRIWKEXGA 631
I++ FFG SFL + IFTY + E G+
Sbjct: 56 ITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGS 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,559
Number of Sequences: 27780
Number of extensions: 298641
Number of successful extensions: 826
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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