Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2080
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    31   0.19 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.2  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   9.5  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 118 NSSCFANESTTGSESRPAEKIRRETQRADSWV 23
           +SSC  +ES    ES PA K   E    DSW+
Sbjct: 298 SSSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 267 TWCVHENIKL-ESYFRSSLIISIAKTILRWPIYC*ALTY 380
           T C+H NI +   Y  +  +  I  +I  W ++C +L Y
Sbjct: 299 TTCIHANIDIVHFYLETPFLAGIFSSIFFW-VWCHSLLY 336


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 369 LNSKLATVKWSSLLKLSTKIENKIPTLCSREHTTYFFFF 253
           +N  L+  K   LL  S +IE K    CS E   ++FFF
Sbjct: 2   INKSLSKSKAFHLLS-SKRIEVKKSFCCSSEGPLFYFFF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,784
Number of Sequences: 5004
Number of extensions: 48384
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)