Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2080
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0424 - 23357012-23357579,23358172-23358211,23358791-233589...    28   7.4  
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238...    28   7.4  
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882...    27   9.8  

>11_06_0424 -
           23357012-23357579,23358172-23358211,23358791-23358969,
           23359570-23359931
          Length = 382

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 273 CVHENIKLESYFRSSLIISIAKTILRWPIY 362
           CVH N KL  + + + I+ I K ++  P+Y
Sbjct: 166 CVHSNSKLSCWSKLAAIVVIKKVVVFPPLY 195


>01_04_0137 +
           16522157-16522601,16522658-16522712,16523655-16523807,
           16525750-16525944,16526096-16526618,16526712-16527103,
           16527201-16527270,16527471-16527506,16527818-16527892
          Length = 647

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = -1

Query: 317 RRSKIRFQLYVLVNTPRIFFFL*LKDYWWPGGLSSFTRTGGRAKAQPGGVGFANSYPSAS 138
           RR  ++ QL V   T R+   L L+D+W PGG     R GG A     G G      SA 
Sbjct: 55  RRRSLQRQLRVATGTRRL---LALRDWWRPGG----DRWGGGAATDGEGRGNDTLALSAD 107

Query: 137 E 135
           E
Sbjct: 108 E 108


>09_04_0660 -
           19286653-19287271,19287791-19287916,19288016-19288221,
           19288417-19288549,19288632-19288713,19288906-19289035,
           19289187-19289279,19289391-19289510,19289594-19289660,
           19290079-19290137,19290719-19290943
          Length = 619

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 189 CSPTCPGETGKASGPPV 239
           C+ TCPG +G  SGP +
Sbjct: 95  CASTCPGPSGSDSGPVI 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,842
Number of Sequences: 37544
Number of extensions: 347117
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)