Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2080
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 205 GQVGEQRLSQEGWDLLTATRAPPKET*QLNSSCFANESTTGSESRPAEKIRRETQRADSW 26
           G+VGE++ S++  D++  + AP  E  +       NE     E    EK+  E ++A + 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 25  VRLHGE 8
            RL  E
Sbjct: 219 KRLERE 224


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 205 GQVGEQRLSQEGWDLLTATRAPPKET*QLNSSCFANESTTGSESRPAEKIRRETQRADSW 26
           G+VGE++ S++  D++  + AP  E  +       NE     E    EK+  E ++A + 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 25  VRLHGE 8
            RL  E
Sbjct: 219 KRLERE 224


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 329 NSEDHFTVANLLLSPYLF-RNQYECKIETRTQTQ 427
           + +DH  VAN+L SP  F RN+ + K++  T  Q
Sbjct: 488 SDDDHNQVANILESPSAFMRNKEDPKVKASTSKQ 521


>AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical
           protein ZK484.4a protein.
          Length = 919

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 229 PEAFPVSPGQVGEQRLSQEGWDLLTATRAPPKET*QLNSSCFANESTTGSESRPAEKIRR 50
           P+  P+    V +Q +    +D + ++ A P +    NSS  A+ STT        +++R
Sbjct: 673 PDKIPILEPNVLKQEMHDPEFDAMESSMASPSKRTTKNSSTAASASTTPVSKWTDRQLKR 732

Query: 49  E 47
           +
Sbjct: 733 Q 733


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 96  SFAKQLLLSC*VSFGGARVAVSKSHPSWLSLCSPTCPGETGKASG 230
           S +   +  C    GG  +  ++SHP W   C+  CP   G   G
Sbjct: 710 SISSNGVCGCLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVGLFEG 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,952,758
Number of Sequences: 27780
Number of extensions: 282363
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)