Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2076
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.9  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    26   5.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.7  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.7  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 192 FSYLFVGSLLRVYSRRKRMRSQDIQVLKVRYKQMLSLYILTDSKNR 55
           F Y ++G ++     RKRMR  D + +K  Y  ML      D+  R
Sbjct: 205 FVYEYIGEVIPEQKFRKRMRQYDSEGIKHFYFMMLQKGEYIDATKR 250


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 599  VSGCWGLFALGIPVLPFRLYPSPTKLKXR 685
            VSG W L +  IP +P   +PS  +++ R
Sbjct: 1203 VSGVWALISRWIPFIPKTSFPSLAEIQSR 1231


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 293 LRSLPGQLVENINGLHFEPSTHFGPTP 213
           L S+  +++EN+  L F PS     TP
Sbjct: 356 LDSITSEIIENLRNLSFAPSVQMHKTP 382


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 444 LNLLWSYTNNSRPKLAKSVQP--FSCFXETNEQRFIFRYIDR*ITDTLTLLNSMSAVVGX 617
           L+ LW    NS    ++++     S   +T E+R + ++ D  + DTL    ++++    
Sbjct: 92  LDRLWDKHINSEGSKSETISDTAISGNDDTMEKR-LEQFSDDTLQDTLETEKNLNSKTSE 150

Query: 618 CLHSASQYYPFD 653
            L S +  YPFD
Sbjct: 151 SLKSPTLSYPFD 162


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 317  PELLYKINLKQTKGIRPTG*HLKGKIKLLFLFNSENFHIYLLFK 448
            P ++   NL  +  + P    + GK+KL F+F+S N +I  L K
Sbjct: 961  PSIIIAYNLCYSTCLGPVK-IVNGKVKLGFMFHSSNPNIVNLIK 1003


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 284 LPGQLVENINGLHFEPSTHFGPTPNIAIAIFSPTYS 177
           LP  +V +ING++    +   P P    A  SPT S
Sbjct: 435 LPNSVVSSINGMNSVNFSTISPPPLSRSASISPTLS 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,615
Number of Sequences: 5004
Number of extensions: 58999
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)