Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2076
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical
           protein Y111B2A.3 protein.
          Length = 718

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 347 VLSLFYTKVQVFCLSIEALRSLPGQLVENINGLHFEPSTHFGPTPNIAI 201
           VL   YT+ ++  +S+E L  +  ++VEN + L +  S    P   + +
Sbjct: 267 VLCELYTENRIPMISVEVLSEIAAKIVENFDNLEYATSARSKPADKVLL 315


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 347 VLSLFYTKVQVFCLSIEALRSLPGQLVENINGLHFEPSTHFGPTPNIAI 201
           VL   YT+ +   +S+E L  +  ++VEN + L +  S    P  N+ +
Sbjct: 267 VLCELYTQNRTPMISVEVLSEIAVKIVENFDNLKYATSARTKPAENVLL 315


>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical
           protein F36D3.5 protein.
          Length = 1152

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 383 SGVTPSDGFLLFVLSLFYTKVQVFCLSIEALRSLPGQLVENIN 255
           +GVTP    +  +++ FY + Q+    I++LRSL G  +E ++
Sbjct: 173 TGVTPDSATVAEIINNFYMEEQLMNTCIDSLRSL-GSKIEKLS 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,728
Number of Sequences: 27780
Number of extensions: 325749
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)