Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2075
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.062
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.14
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 29 0.58
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 29 1.0
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 1.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.0
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.3
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 28 1.8
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 3.1
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 27 4.1
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 27 4.1
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 7.2
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 7.2
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 25 9.5
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 9.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.7 bits (71), Expect = 0.062
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 3/150 (2%)
Frame = -3
Query: 525 LNAILHSLGSIPYEEQTVVNSSQSIVPSALASSS*NMNWQ*SCCHFRAADGF*A*SFHID 346
+ ++L S SIP + +SS + + S ++SSS + S ++ S +
Sbjct: 535 MTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTSLS 593
Query: 345 THSSTETCPSLLESARFLNPSQILIMIS*VSVFFWSPGFHPRRLQIFS---IANSKSFLS 175
SS+ + S SA +PS I IS S SP L I S I+ S S LS
Sbjct: 594 ISSSSTS--STFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS 651
Query: 174 MVPLWLTSKNTLNTYRSFFLLNSETDIFES 85
+ ++L+TY S + +S T + S
Sbjct: 652 SSISTIPISSSLSTYSSSVIPSSSTLVSSS 681
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 432 TLAPMGLSTATNSPLFAPRTESTPTNARWHSARWPRASTTCPGRSSRNYGRSTS 593
++AP + T T+S F + STP+++ S+ P +S++ SS++ S+S
Sbjct: 131 SIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSS 184
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +2
Query: 212 CSLRGWKPGDQKNTETHEIMIKIWDGLRKRAD--SNKDGQVSVEEW---VSMWNDYAQ 370
C+L GW + + H IM++ W L ++ D + + W V M +DY Q
Sbjct: 903 CNLSGWSQSSRYGWKGHHIMVQYWSELTGSSNYMQESDLEYPYKRWFPHVFMDSDYTQ 960
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 53 VLPSLN-ENQTRDSKMSVSEFRRKKLLYVFNVFFDVNQSGTIERKDFE 193
++P+ N +NQ ++ VS F+ +KLL + +N G+ E DF+
Sbjct: 59 IMPTANRDNQGVREELLVSSFKERKLLNTNSANLRLNSIGSYEMIDFK 106
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 122 KLLYVFNVFFDVNQSGTIERKDFELAIEKICSLRGWKPGDQKNTETHEIMI-KIWDGLRK 298
KL++ F ++ D++ +G I + ++ I + G ++ +T E + KI++ +
Sbjct: 100 KLIWAFQLY-DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMM-- 156
Query: 299 RADSNKDGQVSVEEW 343
D NKDGQ+++EE+
Sbjct: 157 --DKNKDGQLTLEEF 169
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 402 STANSCFNWKTLAPMGLSTATNSPLFAPRTESTP 503
ST+ SC ++ P G ST +P P + STP
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 402 STANSCFNWKTLAPMGLSTATNSPLFAPRTESTPTNARWHSARWPRASTTCPGRSS 569
ST+ SC ++ P G ST +P P + S+ S P AST+ G SS
Sbjct: 334 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST------STPPPPASTSSTGTSS 383
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Frame = +2
Query: 62 SLNENQTRDSKMSVSEFR-RKKLLYVFNVF-----FDVNQSGTIERKD-FELAIEKICSL 220
SL+EN+T+DS ++ + LL VF +F F+ NQ+ ++ D F L I + SL
Sbjct: 527 SLSENKTKDSINAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVVKSL 586
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = +3
Query: 348 LCGMTTLRTHQQL*NGSNSTANSCFNWKTLAPMGLSTATNSPLFAPRTESTPTNARWHS 524
LCGM T + N NS S FNW L G + P T T N HS
Sbjct: 416 LCGMDRFLTQKLSWNNINSFPTSTFNWVALD--GSQVICHMPPANTYTADTNVNDVLHS 472
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -3
Query: 519 AILHSLGSIPYEEQTVVNSSQSIVPSALASSS 424
A + ++GS+ E +V ++ Q ++P+++ASSS
Sbjct: 71 AQMQAMGSVSPPELSVHSAQQPLIPTSIASSS 102
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 2 LVPNSARGI---EAACRLAKVLPSLNENQTRDSKMSVSEFRRKKL 127
L P A+ + + A + ++PSLN + D K SV+ +RKKL
Sbjct: 30 LTPEEAKNVINEKIAFKPLLLVPSLNLEKQGDRKESVASKKRKKL 74
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 68 NENQTRDSKMSVSEFRRKKLLYVFNVFF--DVNQSGTIERKDFELAIEKICS 217
+++Q + +S S F +++ + F D NQSG+I+R +F L+I + S
Sbjct: 4 SQSQIFEDLISNSSFSNEEIERIRKRFIKIDANQSGSIDRNEF-LSIPSVAS 54
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 588 YSFHSSWNSSQDTLCLPL 535
Y F WN++ TLC+PL
Sbjct: 141 YKFMRLWNAAFGTLCIPL 158
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3
Query: 429 KTLAPMGLSTATNSPLFAPRTESTPTNAR 515
+T A + LST T++P+F+ T+S+P ++R
Sbjct: 364 ETNASVALSTVTSTPVFS--TDSSPLSSR 390
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 537 LAILLNAILHSLGSIPYEEQTVVNSSQSIVPSAL 436
+ I +NA L + S+P + + S QSIV +AL
Sbjct: 138 IVISVNAPLPNTSSVPSSVENIPPSDQSIVRAAL 171
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 490 VRGANSGEFVAVDSPIGASVFQLKHELA 407
+RG N G +++++ I S FQ+K+E A
Sbjct: 160 IRGVNLGGWLSMEPFITPSFFQVKNETA 187
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 564 SSQDTLCLPLAILLNAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 424
+S L I +++L+S S P TVVNSS I S++ +SS
Sbjct: 1921 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 1965
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 564 SSQDTLCLPLAILLNAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 424
+S L I +++L+S S P TVVNSS I S++ +SS
Sbjct: 2113 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 2157
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 564 SSQDTLCLPLAILLNAILHSLGSIPYEEQTVVNSSQSIVPSALASSS 424
+S L I +++L+S S P TVVNSS I S++ +SS
Sbjct: 2425 TSSSVLNSSTPITSSSVLNS--STPITSSTVVNSSTPITSSSVLNSS 2469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,522
Number of Sequences: 5004
Number of extensions: 65666
Number of successful extensions: 278
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -