Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2074
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   197   1e-51
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   197   1e-51
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   3.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.0  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.9  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  197 bits (481), Expect = 1e-51
 Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%)
 Frame = +2

Query: 32  EDTHFEHRK-HSGASSTFPMQCSALRKNGFVMLKGRPCKXVEMSTSKTGKHGHAKVHLVG 208
           E+ H +     +GAS TFPMQCSALRKNG V++KGRPCK V+MSTSKTGKHGHAKVH+V 
Sbjct: 3   EEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVA 62

Query: 209 IDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDGYLTLMADNGDLREDLKIPDGDL 388
           +DIFNG+KYED+ PSTHNMDVP V R+ YQL +I DDGYL LM  +G  ++D+++P+G+L
Sbjct: 63  LDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGEL 121

Query: 389 GTQLRTDFDSGKEXXCTVLKSCGEECVIAVK 481
           G ++   FD G++   TV+ + GEE  +A +
Sbjct: 122 GNEIEEGFDEGRDLIITVVSAMGEETALACR 152


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  197 bits (480), Expect = 1e-51
 Identities = 88/151 (58%), Positives = 116/151 (76%), Gaps = 1/151 (0%)
 Frame = +2

Query: 32  EDTHFEHRK-HSGASSTFPMQCSALRKNGFVMLKGRPCKXVEMSTSKTGKHGHAKVHLVG 208
           E+ H +     +GAS TFPMQCSALRKNG V++KGRPCK V+MSTSKTGKHGHAKVH+V 
Sbjct: 3   EEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVA 62

Query: 209 IDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDGYLTLMADNGDLREDLKIPDGDL 388
           +DIFNG+KYED+ PSTHNMDVP V R+ YQL +I DDGYL LM  +G  ++D+++P+G+L
Sbjct: 63  LDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGEL 121

Query: 389 GTQLRTDFDSGKEXXCTVLKSCGEECVIAVK 481
           G ++   F+ GK+   TV+ + GEE  +A +
Sbjct: 122 GNEIEEGFEEGKDLIITVVSAMGEEIALACR 152


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 83  PMQCSALRKNGFVMLKGRPCKXVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 235
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 644 RXSEHHLCIIIRFLSYIYTQYYVLHL 567
           R +EH +  + RF+ Y+ T+  VLH+
Sbjct: 323 RRAEHFIAFLKRFVEYLKTRMKVLHV 348


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 434 CTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNXXFFTINNSYINVKHNIVY 592
           C V+    E   +    NT  D  +N   IG     FF +N +++NVK  ++Y
Sbjct: 219 CVVINKDSEFLQMCRPINTTQD--SNEHSIG---SLFFYLNYNFVNVKRQVIY 266


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 519  NAELVYLSRAVFALTAMTHSSPQDFSTVHXXSXPLSKS--VRNCVPRSPSGILRSS 358
            ++ +V  S  + +LTA+  S+P   S+V   S P++ S  V    P + S ++ SS
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSS 2613



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 519  NAELVYLSRAVFALTAMTHSSPQDFSTVHXXSXPLSKS--VRNCVPRSPSGILRSS 358
            ++ +V  S  + + T +  S+P   STV   S P++ S  + +  P + S IL SS
Sbjct: 1190 SSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILNSS 1245


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 377  DGDLGTQLRTDFDSGKEXXCTVLKSCGEECVIAVKANTALDK*TNSAFIGLTNXXF 544
            D +L   L T   +GK   C +      +C++A +   A +  TNS F+   +  F
Sbjct: 2869 DSNLAYVLYTSGSTGKPKGCCLTHHNVVQCMLAFQDQFAGEWDTNSRFLAFASFHF 2924


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 167 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVXR 286
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFR 204


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 260  NMDVPHVXREXYQLTDIXDDGYL 328
            NM +P++  E  Q+ D   D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,858
Number of Sequences: 5004
Number of extensions: 43441
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)