Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2074
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 189 2e-48
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 182 2e-46
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 171 3e-43
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 137 9e-33
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 50 2e-06
02_05_0250 + 27153048-27154453,27154546-27154885 33 0.29
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.2
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 4.7
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 189 bits (460), Expect = 2e-48
Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 2/154 (1%)
Frame = +2
Query: 26 DIEDTHFEHRKHSGASSTFPMQCSALRKNGFVMLKGRPCKXVEMSTSKTGKHGHAKVHLV 205
D E+ HFE + +GAS T+P Q +RKNG++++K RPCK VE+STSKTGKHGHAK H V
Sbjct: 3 DSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFV 62
Query: 206 GIDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDGYLTLMADNGDLREDLKIP-DG 382
GIDIFNGKK EDI PS+HN DVPHV R YQL DI +DG+++L+ ++G+ ++DL++P D
Sbjct: 63 GIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDD 122
Query: 383 DLGTQLRTDF-DSGKEXXCTVLKSCGEECVIAVK 481
L Q++ F + GK+ TV+ + GEE + AVK
Sbjct: 123 TLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 182 bits (444), Expect = 2e-46
Identities = 83/157 (52%), Positives = 113/157 (71%), Gaps = 5/157 (3%)
Frame = +2
Query: 26 DIEDTHFEHRKHSGASSTFPMQCSALRKNGFVMLKGRPCKX----VEMSTSKTGKHGHAK 193
D E+ HFE + +GAS T+P Q +RKNG++++K RPCK VE+STSKTGKHGHAK
Sbjct: 16 DSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGHAK 75
Query: 194 VHLVGIDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDGYLTLMADNGDLREDLKI 373
H V IDIFNGKK EDI PS+HN DVPHV R YQL DI +DG+++L+ ++G+ ++DL++
Sbjct: 76 CHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRL 135
Query: 374 P-DGDLGTQLRTDFDSGKEXXCTVLKSCGEECVIAVK 481
P D L Q++T F GK+ TV+ + GEE + A+K
Sbjct: 136 PTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 171 bits (417), Expect = 3e-43
Identities = 83/166 (50%), Positives = 111/166 (66%), Gaps = 14/166 (8%)
Frame = +2
Query: 26 DIEDTHFEHRKHSGASSTFPMQCSALRKNGFVMLKGRPCKX-------------VEMSTS 166
D E+ HFE + +GAS T+P Q +RKNG +++K RPCK VE+STS
Sbjct: 1325 DSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVSTS 1384
Query: 167 KTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDGYLTLMADN 346
KTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R YQL DI +DG+++L+ ++
Sbjct: 1385 KTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTES 1444
Query: 347 GDLREDLKIP-DGDLGTQLRTDFDSGKEXXCTVLKSCGEECVIAVK 481
G ++DL++P D L TQ++ F GK+ TV+ + GEE + A+K
Sbjct: 1445 GGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 137 bits (331), Expect = 9e-33
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Frame = +2
Query: 143 KXVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVXREXYQLTDIXDDG 322
K VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R YQL DI +DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 323 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKEXXCTVLKSCGEECVIAVK 481
+++L+ +NG+ ++DL++P D +L +Q++ F GK+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 26 DIEDTHFEHRKHSGASSTFPMQCSALRKNGFVMLKGRPCKXVEMSTSKTGKHGHAKV 196
D E+ HFE + +GAS T+P Q +RKNG++++K RPCK + GH V
Sbjct: 3 DSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKDQILVRFTNFGQGHVVV 59
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 275 HVXREXYQLTDIXDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKEXXCTVLK 448
H+ R YQL DI +DG +++L+ ++G+ ++DL +P D L Q++T F GK+ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 449 SCG 457
+ G
Sbjct: 106 AMG 108
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 338 ADNGDLREDLKIPDGDLGTQLRTDFDSGKEXXCTVLKSCGEECVIAVKANTA 493
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 266 DVPHVXREXYQLTDIXDDGYLTLMADNGDLREDLKIPDGD 385
D P+ RE +++ + D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 125 LKGRPCKXVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI 244
LK + V+ TSK G+ GH KV V ++ KK D+
Sbjct: 679 LKNQDLLDVDSGTSKIGQSGHDKVEHVTNELSISKKAADV 718
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,091,677
Number of Sequences: 37544
Number of extensions: 298766
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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