Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2071
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202     27   7.5  
05_07_0333 - 29351372-29351665,29351786-29351928,29352374-293524...    27   9.9  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    27   9.9  

>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
          Length = 580

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +1

Query: 148 SLFGTQEFTSSTAVIKGSVRRG--KSS*PEAVPTVGTLPTNANXAPNSPSYGSF 303
           +L   QE    T    G   +G  K+  P   P     P N N  PN P+Y  +
Sbjct: 64  NLLSIQEMLGGTTSCMGQEIKGTPKTPVPPPFPPAPPPPPNQNNLPNIPNYNPY 117


>05_07_0333 -
           29351372-29351665,29351786-29351928,29352374-29352434,
           29352950-29353034,29353254-29353292,29353487-29353557,
           29353640-29353735,29353869-29354017,29354106-29354175,
           29354752-29354792,29354902-29354977
          Length = 374

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +1

Query: 115 SMNNGSLXDIXSLFGTQEFTSSTAVIKGSVRRGKSS*PEAVPTVGTLPTNANXAPNSPS 291
           ++N GSL    S  G ++ TS  AV   S   G+SS     P V +    +  A  S S
Sbjct: 253 AINAGSLAKQKSPIGHEQSTSKDAVFSSSTFLGRSSGSSRRPAVSSSREPSTEADQSRS 311


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 279 WSXVRICWQRAHSGHGLWSRALTASNAALYNGS 181
           WS + + W     GHG+W  +  +  +A+ +GS
Sbjct: 72  WSGMDVVWPH---GHGVWGSSSASRRSAMLHGS 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,828
Number of Sequences: 37544
Number of extensions: 199321
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)