Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2069
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 31 0.98
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 3.0
11_06_0679 - 26227654-26227770,26234067-26236217 29 3.9
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.9
02_03_0005 + 13865016-13865025,13865247-13865374,13865467-138659... 29 3.9
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521 28 6.9
07_03_0698 - 20765305-20768526 28 6.9
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 28 6.9
03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584 28 9.1
01_06_1623 - 38716606-38717424 28 9.1
>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 80 SARPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 238
S RPS GH H P + + + P P PV +SVP+ + P P P
Sbjct: 945 SRRPSRSEFKGGHDHRSPCVPSNRRDIPLVRRP-PSPVVLSVPRVPRPPPPSP 996
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 161 KKIGVPIPHPVAVSVPQYVKVPI--PQPYPVHVTVEQPI 271
K P P P AV +P+ V +P P P PV T P+
Sbjct: 746 KPAATPGPAPQAVPLPKPVSIPASGPAPAPVSATTAAPV 784
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 20/60 (33%)
Frame = -2
Query: 248 GPGRVEVWAPSRTAGPTQPPDGESELRSSSPRSHGTASCVLCACGLRAPILQKAERWRAL 69
G GR W R G PD ++ P H T C C + P E R +
Sbjct: 589 GRGRGRWWNNERGKGRENKPDQTKFCQTHGPGGHSTEECYSKFCHIHGPGGHSTEECRQM 648
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 317 LVFQQLGGQPYKQVHG*VAPL*RGPGRVEVWAPSRTAGPTQ--PPDGE 180
L F QLG Q + VHG P+ G G W P+R +GPT+ P GE
Sbjct: 408 LSFHQLGTQSREMVHG-KPPV--GGG----WTPNRNSGPTRKAPSRGE 448
>02_03_0005 +
13865016-13865025,13865247-13865374,13865467-13865994,
13866111-13866287
Length = 280
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 167 IGVPIPHPVAVSVPQYVKVPIPQ-PYPVH 250
IG P+P+P +V VP V VPIP P+H
Sbjct: 91 IGPPLPYPFSVPVP--VPVPIPSGAVPMH 117
>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
Length = 481
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 80 SARPSEEWEPEGHTHTEHTKPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 238
S ++ P+GHT E T + T + VPI P V V Q +P+ QP
Sbjct: 260 SRHQKKKTSPKGHT-AEGTMNF--TSIAPSQVPITQPFQVPVTQPSHIPLTQP 309
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 409 LRDGHLYFFFDLNGIRLFDFIGHWFFD-RVRYWFFNNLVDNLI 284
L G L L+GIR H F + +R+W F NL+D +I
Sbjct: 950 LNQGALDVLSRLDGIRYLRLCYHSFAEGALRFWSFGNLMDLII 992
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Frame = +3
Query: 231 LNPTRSTSQWSNLSMYLFIRLSTKL-------LKNQYRTRSKNQCPMKSKSLIPLRSKKK 389
L+ RS S WS ++ +S KL L+ + R S+ M+ + R +K+
Sbjct: 469 LDQVRSGSFWSKYKHTKYVPVSEKLKDFIYAQLEEKVRRLSEYDKRMERERE---RERKR 525
Query: 390 *RCPSLSPIPSMYPCTNTSTT 452
R PS SP PS P + S T
Sbjct: 526 VRAPSPSPSPSPSPSPSASAT 546
>03_06_0702 + 35626836-35627712,35627820-35627992,35629318-35629584
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 128 EHTKPYH-VTVVKKIGVPIPHPVAVSVPQYVKVPIPQP 238
E T P+ V V + P+PVAV+V + P+PQP
Sbjct: 72 ESTTPHSPVAVDEPESSTAPNPVAVAVAEPKPAPVPQP 109
>01_06_1623 - 38716606-38717424
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 137 KPYHVTVVKKIGVPIPHPVAVSVPQYVKVPIP 232
+PY V V++ IG PIP A +VP + +P+P
Sbjct: 11 RPYFVDVLQSIGHPIP---ATAVPD-ITLPVP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,846
Number of Sequences: 37544
Number of extensions: 424384
Number of successful extensions: 1660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -