Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2068
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    35   0.011
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   5.0  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   6.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   6.6  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   8.7  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   8.7  

>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 161 DGSKFIPATQRPDGTWRKPRRIKEGYVPQEEVPLY 265
           DG   IP ++R DG+ R+ R +K GY   E++  Y
Sbjct: 14  DGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRY 48


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 129 CQHQRLMSTTLMGVNSFLQLKDLMEPGASREE*KKVMYLKKRYRCMKAKENSSGPGK 299
           C H+  M    +  NS  +L+ ++E        +K  Y K +   +  KEN S   K
Sbjct: 450 CIHRLFMVLYYLNTNSAPELERIIESDLPNNNKQKDRYFKDKTSNLSMKENKSFSAK 506


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 209 RKPRRIKEGYVPQEEVPLYE-----SKGKQFRARQNDGLPVGLTPEIVAQAQKKKG 361
           R    +   YVP+ E  +YE     +K + +   Q + LP  +TPE V     K G
Sbjct: 199 RSGSHVNRIYVPKAEQEMYEYYVRAAKERPYLNLQVEYLPEEITPEWVRDVNDKPG 254


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 523 YISV*SDKTPQESQKKAXRNRVSRGKNKSRAS 618
           + SV   +TP  + K     R SRG NK+R S
Sbjct: 550 FSSVEKIETPPNNSKNQTYRRSSRGSNKTRKS 581


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
          Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 78 NVFLNNELFSWYSTQSNQDSHKK 10
          N F+ N L  WYS   ++  H+K
Sbjct: 20 NQFIINSLLPWYSCSEHEFPHRK 42


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  LCESWFDCVEYHENSSLFKNTLP*FINVEIQ 106
           +C  W  C + HEN+S   + LP F+N+  Q
Sbjct: 382 ICSRWI-C-DLHENTSFNIDILPGFLNLSYQ 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,589
Number of Sequences: 5004
Number of extensions: 44881
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)