Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2066
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   1.0  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.1  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.1  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   5.4  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   7.2  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -1

Query: 565 AVFRHLDRSGLNHSWIT*QTVGRACR------LQCPWARACA 458
           A F+ LD   +N SW   QTV   C       ++ PW R CA
Sbjct: 197 AFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
 Frame = +1

Query: 100 SDNGPVYARFTHLNYRHFSYRINVNNTGSSRRTTVRIFITPKFDERNVPWIFSDQ--RKM 273
           +DN  + A      Y++ +YR N +N  +S+                  W+  DQ  R M
Sbjct: 438 TDNEEIVAAALDFLYQYTTYRTNTSNLLASQEA----------------WMLVDQLIRLM 481

Query: 274 CIE-MDRF--VTVLNAGENNIVRQSTESSITIPFEQ 372
             +  +RF  VT+ N+  N  V+    SSI++P E+
Sbjct: 482 MYQAQERFMTVTIENSESNPAVKHEATSSISLPMEE 517


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = -2

Query: 297 DESVHFNTHLALVREYPGDIALVELRSDED-----THCGATAATGVVHVYSVAEMPVVEV 133
           +E VH+NT+  +V E    + + EL  D D      +   T  T   H   ++ +P  + 
Sbjct: 212 EEPVHYNTYDGVVNEPNSSVIIEELDDDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDS 271

Query: 132 SEASVHGPV 106
            +  + G V
Sbjct: 272 MDIDMGGAV 280


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 251 IQGTLRSSNFGVMKIRTVVRRLLPVLFTFIL*LKCL*LR*VKRAYTGPLSEKSSPRDKFT 72
           ++  LR       K  T  +  L  LF+ I    CL +  VKR  +G  S  SSP  K +
Sbjct: 216 LESPLRKQGSHNWKTSTNSQSRLAALFSSIFEDSCLEVDSVKRLLSGSPSSSSSPLKKDS 275

Query: 71  S 69
           S
Sbjct: 276 S 276


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 317 SPAF-RTVTNLSISIHILRWSENIQGTLRSSNFGVMKIRTVV 195
           SP F +T T  +  IHI ++SE +   L   +   + +RT++
Sbjct: 56  SPLFIKTTTRPTALIHITKYSEALASRLLKGHMTQLSLRTIL 97


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 601 KDKKYPDXRAMGFPFDRPSSSATSLQDFILPNMGLQDITIQLQNVTEPN 747
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 547 QDDGKQLTCVEASSFCGLKDKKYPDXRAMGFPFDRPSSSATSLQDFI 687
           Q+D   LT +  +SF GL +         G  FDR + + T+L + +
Sbjct: 269 QEDNASLTALTRASFDGLVNINRVVIMRSGSDFDRGAGNITALANLL 315


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 306 QDSDESVHFNTHLALVREYPGDIALVE 226
           +D DE  + N    L+ +YP DI   E
Sbjct: 217 EDEDEDNNNNNRWLLIEQYPSDIVAYE 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,935
Number of Sequences: 5004
Number of extensions: 70360
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)