Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2066
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0944 - 7971372-7971446,7972248-7973282                           29   4.3  
03_02_0517 + 9054816-9055655                                           28   7.5  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    28   9.9  

>07_01_0944 - 7971372-7971446,7972248-7973282
          Length = 369

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 408 WIIALSG*VAECLFERNSYGRLRRLTDNIILSGVQDSDESVHFNTHLALV 259
           W  AL G V   L E N       LTD ++L+ ++ +  + HFN  ++ V
Sbjct: 253 WSTALQGPVNRILEEANGTLNYADLTDRLMLAQLEGTLCTAHFNDQISAV 302


>03_02_0517 + 9054816-9055655
          Length = 279

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 368 NRHSATYPLRAMIHDATNSLPSITAAAAGLSTCSCPRALKPACPSNCLLC 517
           +R  A  P       A  S+PS+T A +G     C  A +P   +  + C
Sbjct: 104 SRLEAAAPRPPASKAAVESMPSVTVAGSGAHCAVCQEAFEPGASAREMPC 153


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 122 AYTGPLSEKSSPRDKFTSLSIQNVFSVFGCPPGVS 18
           A+   +   S P D  +S+  Q+  S FG PPGVS
Sbjct: 442 AFPASVMPTSVPNDGGSSMMGQSHSSFFGAPPGVS 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,639,574
Number of Sequences: 37544
Number of extensions: 511952
Number of successful extensions: 1524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)