Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2066
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical...    30   2.2  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   3.9  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   3.9  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   3.9  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   6.7  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   8.9  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family ...    28   8.9  

>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 129 HSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRHCPE 308
           H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R    
Sbjct: 666 HERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRLEEH 718

Query: 309 RRRE 320
           RRRE
Sbjct: 719 RRRE 722


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 129 HSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRHCPE 308
           H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R    
Sbjct: 666 HERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRLEEH 718

Query: 309 RRRE 320
           RRRE
Sbjct: 719 RRRE 722


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = +1

Query: 652 PSSSATSLQDFILPNMG--LQDIT---IQLQNVTEPNPRNPP 762
           P    T +Q  I+P MG  LQDI    + L++V E NPR+PP
Sbjct: 296 PKGYLTDMQS-IIPQMGGDLQDIKKARMLLKSVRETNPRHPP 336


>AF100656-10|AAF99967.1|  301|Caenorhabditis elegans Hypothetical
           protein F49F1.11 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 19  ETPGGQPNTLNTFWMLSDVNLSRGLDFSDNGPVYARFTH 135
           ET GG P   NT++ ++ VN    ++   NG  +  F H
Sbjct: 163 ETYGGNPFRANTYFNVTMVNQPTHIEIHVNGAFFVNFNH 201


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 413 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 511
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 413 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 511
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 413 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 511
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 667 TSLQDFILPNMGLQDITIQLQNVTEPNPRNP 759
           ++++ F+LPN   + IT+QL  V  P+ RNP
Sbjct: 206 STVRAFLLPNF--EYITLQLSGVRAPSTRNP 234


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 138 QLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCP 245
           QLQ    Q +++Q   +P H S++ HH E RR + P
Sbjct: 184 QLQQQHHQQQQQQLAFRPRHRSSH-HHQEPRRHRAP 218


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 269 RCVLKWTDSSLS*TPERIILSVSRRSLP*LFRSNRHSATYPLRAMI-HDATNSLPSITAA 445
           RC  K+     S T  R++L+   +SLP L  ++  ++  PL ++I   A   +PS+T  
Sbjct: 131 RCWDKYRRGPCSSTIVRLLLATVDKSLPMLLTTSTCASIIPLVSIIVSPAKTIIPSVTLC 190

Query: 446 AAGLSTCSC 472
              L    C
Sbjct: 191 VLNLLQNIC 199


>AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family
           protein 32 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 320 FSPAFRTVTNLSISIHILRWSENIQGTLRSSNFGVMK 210
           + P  R  T+  IS+ +  WS+    T+ SSN  V +
Sbjct: 144 YVPVLRFTTSSGISLEVTVWSQKFVTTMTSSNRSVKR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,687
Number of Sequences: 27780
Number of extensions: 416602
Number of successful extensions: 1275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)