Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2062
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   2.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   8.7  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 148 LPAPLPPDRDGALGHGDQPSGAFAVRETEVADEDAPRRLEE 270
           LP PLPP    +L  G   + +F   E +V  E   + L +
Sbjct: 179 LPTPLPPPSSSSLPTGTISTNSFCPYERKVQPEHVTKELHQ 219


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 383  SIMEPKVIGFSVYKMPKFLTETANQMFFKRIKSTINSQYTNSRQ 514
            +I+   +IGFS YK    + ET N+MF   + +  ++   N  Q
Sbjct: 1098 NIVAGLIIGFSFYKQGVGVEETQNKMFSAYMLTVASTSTMNGLQ 1141


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +2

Query: 341 LNEPDTVIISLNQHSIMEPKVIGFSVYKMPKFLTETANQMFFKRIKSTINSQYTNSRQVS 520
           + E D +I S ++      + +  S++K PK  + + N+ +  +  S   +  T++ Q+S
Sbjct: 4   IQENDPIIKSADESKESPAETLS-SIFKRPKIKSSSLNKAYLGKAGSVNGASNTSTNQIS 62


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 162 KRRWKSLNSIQTPLDAIISLXLSYCGIVFHKAVXSTMCDI 43
           K  W+ L  + + +DA  S+ L  C I++       +C+I
Sbjct: 68  KLSWEHLVLLWSTIDAFFSMCLRSCTIIYFSMNPYMLCEI 107


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 256 RRLEEGRICWRMSELRQFLPHESPSSNHVERARHC 360
           +RLE+  + W+   + Q  P  + S     R RHC
Sbjct: 263 KRLEQSIVHWQDDSVVQICPECNNSFTLTRRRRHC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,684
Number of Sequences: 5004
Number of extensions: 60154
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)