Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2062
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 57 2e-08
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 31 1.3
01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356 29 5.2
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 28 6.9
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 28 9.1
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 28 9.1
01_06_0249 + 27868897-27871599 28 9.1
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 56.8 bits (131), Expect = 2e-08
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Frame = +2
Query: 257 GGWKRGVSAGGCRNYVNFFHTNPQVQIMLNEPDT-----VIISLNQHSIMEPKVIGFSVY 421
G W RG SAGGC++Y + +H NPQ ++ + D V I+L Q K GF Y
Sbjct: 1950 GQW-RGYSAGGCQDY-DSWHQNPQYRLRVTGRDALYPVHVFITLTQGVGFSRKTNGFRNY 2007
Query: 422 K-----------MPKFLTETANQMFFKRIKSTIN-SQYTNSRQVSQRCQLES--GAYLIM 559
+ M T + + ++ + Y NSR++S LE Y I+
Sbjct: 2008 QSSHDSSMFYIGMRILKTRGCRAAYNIYMHESVGGTDYVNSREISCELVLEPYPKGYTIV 2067
Query: 560 PTTFEPREEAQFTLXIYSNKPLKMKVL 640
PTT P EEA F L +++ P+K++ +
Sbjct: 2068 PTTIHPGEEAPFVLSVFTKAPIKLEAV 2094
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 214 FAVRETEVADEDAPRRLEEGRICWRMSELRQFLPHESPSSNHVERARHC 360
+A +TE D D +LEEG + + + R+ +P N + RHC
Sbjct: 33 YATEKTEDVDPDDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHC 81
>01_06_1591 - 38484790-38485467,38486165-38486292,38487098-38487356
Length = 354
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 174 RWCTWTRR-PAERSFRCPRNRSGR 242
RWC+W RR PAER + + SGR
Sbjct: 38 RWCSWRRRQPAERWPKLAVSASGR 61
>03_05_1149 +
30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 279 DTPLFQPPWC-IFICHFCFSDSESSARLVSVSKCTISIRGKRRWKSLNSIQTPLDAIISL 103
D PL P C +F+C S S S+ C S++ R + + +TP++ +
Sbjct: 453 DLPLSAPTCCQVFLCGQELSGK--STLCSSIKHCMNSMK-LPRMDEIRTSKTPIEQMSHT 509
Query: 102 XLSYCGIVFHKAVXSTMCDIG 40
I+F TMC+IG
Sbjct: 510 NEYGMNIIFDGNTKLTMCNIG 530
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 208 GAFAVRETEVADEDAPRRLEEGRI 279
G VRE E+A E+AP EGR+
Sbjct: 11 GGVEVREAELAVEEAPAATSEGRV 34
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -3
Query: 421 INAESNYFR--LHYAVLVQRYNHSVWLVQHDLNLGIRVEE 308
+NA+ N + LHYAVL +R + + LV+H ++ I+ E+
Sbjct: 278 VNAQDNEGQTALHYAVLCEREDIAELLVKHHADVQIKDED 317
>01_06_0249 + 27868897-27871599
Length = 900
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 353 DTVIISLNQHSIMEPKVIGFSVYKMPKFLTETANQMFFKRIKSTINSQYTNSR-QVSQRC 529
D +++ Q S ++ K G V + L E +++FF++I T+ YT + R
Sbjct: 554 DCLVLITVQFSSLDAKTQGHGVGAISS-LREKNDRLFFEKIDITLYGMYTEQLFEAISRM 612
Query: 530 QLESGAYLIMPTT 568
+ES L++ TT
Sbjct: 613 DMES-IMLVLSTT 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,464,815
Number of Sequences: 37544
Number of extensions: 422074
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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