Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2062
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ304410-1|CAC67443.1|  190|Anopheles gambiae calpain protein.         79   1e-16
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.5  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   7.6  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   7.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   7.6  

>AJ304410-1|CAC67443.1|  190|Anopheles gambiae calpain protein.
          Length = 190

 Score = 79.4 bits (187), Expect = 1e-16
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 18/160 (11%)
 Frame = +2

Query: 2   LIRLRRPLGHGETPISHIVLXTALWKTIPQYERXRLMIA---SKGVWMLFSDFQRLFPRI 172
           LIRLR P G+           +  W+ IP  ++  L +        WM + DF R F R+
Sbjct: 5   LIRLRNPWGNEAEWNGPWSDKSPEWRYIPDEQKQELGLNFDHDGEFWMSYRDFTRYFDRM 64

Query: 173 EMVHLDTETSRAELSLSEKQKWQMKMHQGGWKRGVSAGGCRNYVNFFHTNPQVQIMLNEP 352
           E+ +L  ++   +     K  W+M M +G W  G +AGGCRNY++ F  NPQ  I L++P
Sbjct: 65  EICNLSPDSLSDDEMTRGKISWEMSMFEGEWAVGTTAGGCRNYLDTFWHNPQYVIRLDDP 124

Query: 353 D--------TVIISLNQHSI-------MEPKVIGFSVYKM 427
           D        TVII+L Q +        +E   IGF+VY++
Sbjct: 125 DEDDEEGNCTVIIALLQKNRRSRRNMGVECLTIGFAVYRV 164


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 92  YERXRLMIASKGVWMLFSDFQRLFPRIEMVHLDTETSRAELSLSEKQKWQM 244
           Y R   M   KG+  + SDF +   +I M + DT +    L L+ K +W +
Sbjct: 533 YLRLGCMARDKGLIFVASDFFKDALKINMENPDTRSLLGNLHLA-KMQWTL 582


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 270 LFQPPWCIFICHFCFSDSESSARLVSVSKCTISIRGKRR 154
           L    W +   ++ +  S +  RL+  SKCT  I   RR
Sbjct: 405 LLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARR 443


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 379 TQHNGA*SNWIQRL*NAKVSYRDRQPNVFQEDQKHDQL 492
           TQ+N    N++     ++V+ R  Q    Q +Q H QL
Sbjct: 188 TQYNALNDNYVTSPQPSQVTSRQLQQQQLQPNQLHQQL 225


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 352 WLVQHDLNLGIRVEEIDVIPTSSSRY 275
           W+VQH L+L     E+ +I +  S Y
Sbjct: 697 WMVQHKLSLAPEKTELLMISSKRSGY 722


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,376
Number of Sequences: 2352
Number of extensions: 15549
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)