Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2061
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 76 6e-15
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 31 0.24
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.2
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 2.9
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 27 3.8
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.1
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 6.7
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 8.9
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 8.9
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 75.8 bits (178), Expect = 6e-15
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Frame = +1
Query: 4 SNVDLGGLAQIIISQNYIGSVVKQCLXXXXXXXXXXXXXXXXVFGVTTVVNITKRKNEPS 183
+NV+L LA +I+SQ +GS VK + + +V+N+ R++EP
Sbjct: 99 TNVNLSALADLILSQPLLGSTVK------------VDGNNSDPYAMLSVINLNTRRDEPV 146
Query: 184 VAQIRE-LLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVPLFASLQ 360
+ Q+ ++++L++ N+ EL K + + GL++NER++N+P + P++ L
Sbjct: 147 IKQLTSYIISRLAKSNSRLEN-ELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLL 205
Query: 361 TELEKAHRKNMLYNFKYLIWISKTYTTGES 450
E++ A +N YNF + + +S+TYT ES
Sbjct: 206 EEMQWAINENEPYNFTHYLLLSRTYTEIES 235
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 169 KNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 327
KN PS + I +L+ + E+ R + LIK + D NE++ +P+
Sbjct: 15 KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPS 67
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 364 ELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQEEKSLVSEAIASFDV--DVTDQA 537
++E RKN Y + L + ESS+VL ++E K L E ++ FD +TD+
Sbjct: 439 DMENVFRKNE-YLMEELNELKNNLEV-ESSKVLRLDEEMKCLKDEQLSQFDTVFSLTDER 496
Query: 538 DLSQWD 555
D Q D
Sbjct: 497 DGLQKD 502
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 139 VTTVVNITKRKNEPSVA-QIRELLTK-LSQENADPRTKELIKYILADDSQHTGLVINERI 312
++ VVN T+ K + Q+ LT+ L++ DP ++++ Y+L + S+ ++NE I
Sbjct: 239 ISHVVNATRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWI 298
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 190 QIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVPLFA 351
+ R L LSQ N R ++ + + +Q + ++ +IL IPA I +PL A
Sbjct: 57 KFRGALNALSQLNEAQRKAGVLTFSSGNHAQ--AIALSAKILGIPAKIIMPLDA 108
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 209 VSNSLICATLGSFFLL-VIFTTVVTPKT 129
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 145 TVVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQH 285
T N+ N PSV + ++ NAD + E IK ++ +S +
Sbjct: 358 TADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAY 404
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 325 AAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQEEKSLVSEAI 504
A + + ELE + L+NF+ I + S +V AN +KS+ +
Sbjct: 53 ACVDEATMIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVLQKSVWKGIL 112
Query: 505 ASFDVDVTDQADLSQ 549
D T+ DL++
Sbjct: 113 FHVTYDGTESVDLAR 127
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +1
Query: 169 KNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISV 339
K PS + I +L+ + E R + LI + + + NE++ +P+A +V
Sbjct: 15 KQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSAGAV 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,645
Number of Sequences: 5004
Number of extensions: 43946
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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