Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2061
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    31   0.75 
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    30   2.3  
01_01_0231 + 1951047-1951499                                           29   3.0  
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           29   3.0  
01_01_0229 - 1943473-1943922                                           29   3.0  
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317...    28   7.0  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   9.3  

>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 263 IYLINSLVLG-SAFS*DSFVSNSLICATLGSFFL 165
           + + +SLVL  SA S D  + NSLIC +LG FFL
Sbjct: 524 VLMASSLVLFLSAVSPDFVLGNSLICMSLGVFFL 557


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 151 VNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 327
           +NI  +  + SV+ I + L  LS+       K+L++   ADD+   G   NE     PA
Sbjct: 689 ININDQSKQASVSLILDSLKDLSEAELSTIRKQLLEEFSADDACPLGSHSNESTSQSPA 747


>01_01_0231 + 1951047-1951499
          Length = 150

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 KEKMNPVWHRSENCLQNYLRRMQIPE 241
           KE  N  WHR E     ++RR ++PE
Sbjct: 88  KEDKNDKWHRVERSSGQFMRRFRLPE 113


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 KEKMNPVWHRSENCLQNYLRRMQIPE 241
           KE  N  WHR E     ++RR ++PE
Sbjct: 88  KEDKNDKWHRVERSSGQFMRRFRLPE 113


>01_01_0229 - 1943473-1943922
          Length = 149

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 164 KEKMNPVWHRSENCLQNYLRRMQIPE 241
           KE  N  WHR E     ++RR ++PE
Sbjct: 87  KEDKNDKWHRVERSSGQFMRRFRLPE 112


>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
            3179892-3179999
          Length = 957

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 356  YRLNLRKLIGKICYTTLNTLFGSVKLTLLESHQKCFLQIK 475
            + +NLR+ +G +   T    F  + +++ E    CF +IK
Sbjct: 901  FDINLRRQLGALSSKTFEVFFKLINISISEDETVCFNRIK 940


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +1

Query: 163 KRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVP 342
           +R+ EPS       LTK S    +   K++IK +L+D+    G+     ++ I  A  V 
Sbjct: 162 ERRREPSPLTPTSCLTKCSLHGRERDKKQVIKLLLSDEYNCQGVY---SVVPIVGAAGVG 218

Query: 343 LFASLQTELEKAHRKNMLYNFKYLIWISKTY 435
              SL   +         ++ K  +W+ + +
Sbjct: 219 K-TSLVQHIYNDEALRSKFDMKMWVWVCQEF 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,111,315
Number of Sequences: 37544
Number of extensions: 238417
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)