Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2061
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58758-10|AAB93435.1|  349|Caenorhabditis elegans Hypothetical p...    34   0.095
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr...    33   0.29 
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    33   0.29 
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    33   0.29 
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    31   0.89 

>U58758-10|AAB93435.1|  349|Caenorhabditis elegans Hypothetical
           protein ZK1127.4 protein.
          Length = 349

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
 Frame = +1

Query: 133 FGVTTVVNITKRKNEPSVAQIRELLTKL---SQENADPRTKELIKYILADDSQHTGLVIN 303
           +G+ T V +   K++ +   I++L T +   +++ A     + I+ I       + L +N
Sbjct: 133 YGLCTTVPLNDNKDD-APKFIKDLFTYVLNRAKKGAPTEIYKKIEEIQVSGDGKSALFVN 191

Query: 304 ERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISK 429
           ER+LN P  +   +F S++ +L     K     +K +I+I K
Sbjct: 192 ERLLNFPTIVVPQIFGSIREDLSGFETK-----YKTIIYIQK 228


>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
            T01G1.1c protein.
          Length = 1580

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 439  TGESSEVLFANQEEKSLVSEAIASFDVDV 525
            T    E+LFAN EE S+VS+A A+  VDV
Sbjct: 1068 TATQEELLFANSEENSMVSDANANPTVDV 1096


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 439  TGESSEVLFANQEEKSLVSEAIASFDVDV 525
            T    E+LFAN EE S+VS+A A+  VDV
Sbjct: 1068 TATQEELLFANSEENSMVSDANANPTVDV 1096


>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
            T01G1.1c protein.
          Length = 1580

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 439  TGESSEVLFANQEEKSLVSEAIASFDVDV 525
            T    E+LFAN EE S+VS+A A+  VDV
Sbjct: 1068 TATQEELLFANSEENSMVSDANANPTVDV 1096


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical protein
            T01G1.1a protein.
          Length = 1605

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 439  TGESSEVLFANQEEKSLVSEAIASFDVDV 525
            T    E+LFAN EE S+VS+A A+  VDV
Sbjct: 1068 TATQEELLFANSEENSMVSDANANPTVDV 1096


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
            protein KLP-12 protein.
          Length = 1609

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 439  TGESSEVLFANQEEKSLVSEAIASFDVDV 525
            T    E+LFAN EE S+VS+A A+  VDV
Sbjct: 1072 TATQEELLFANSEENSMVSDANANPTVDV 1100


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +1

Query: 298 INERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQE 477
           INER L +     V +F     +L+  ++   L  FK +IW+ K Y      +++ ++  
Sbjct: 125 INERNLVVILTTHVDIFIVRAIDLQMENQTERLEAFKLIIWMLKIYEKSNLKKLIDSSAA 184

Query: 478 EKS 486
           +K+
Sbjct: 185 QKN 187


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +1

Query: 298 INERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGESSEVLFANQE 477
           INER L +     V +F     +L+  ++   L  FK +IW+ K Y      +++ ++  
Sbjct: 125 INERNLVVILTTHVDIFIVRAIDLQMENQTERLEAFKLIIWMLKIYEKSNLKKLIDSSAA 184

Query: 478 EKS 486
           +K+
Sbjct: 185 QKN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,100
Number of Sequences: 27780
Number of extensions: 237057
Number of successful extensions: 559
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)