Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2060
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 29 0.72
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 3.8
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 3.8
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 6.7
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.7
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 8.9
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 128 SENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDG 253
S N D + + + +TS R RRK K+ RSN + G
Sbjct: 109 STNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHG 150
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.3
Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 3/118 (2%)
Frame = -3
Query: 671 PRPFRSASPCDPTLSP---QLSRTPDDSSRRSQSXGTPRRPRSCLHAQNTLISQAPIYG* 501
P S +P PT+ P + TP + S S GT P T + P G
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTS-STGTSSSPLPSTSTSCTTSTSIPPTGN 350
Query: 500 YPRAPLRL*PA*IRCRRW*PPPNRSSDRSGPPRTPRASQIRADPTRLCLPPHLSSVTP 327
P PPP S+ +G +P S + T +PP +S TP
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTP 408
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Frame = -2
Query: 684 SDMRTEAISQCIAL*SNAI----STIVSHTR*LLAAVTKXRNSSAAAFVSPCS------- 538
S + T IS ++ S+++ ST+VS + L+ + + +SS++ S S
Sbjct: 652 SSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSA 711
Query: 537 KYSNITGSDLRIISSGSASTMTCLNSMSPLVTAS 436
SNIT S L + + S+S + + S L+TAS
Sbjct: 712 SLSNITHSSLSLTAMSSSSAIPTSVNSSTLITAS 745
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 180 SPAPCSTTGFSSIATFSESEAMRSTSIAATVRFIL 76
S A CS GF+++ T +E+ +S + A F+L
Sbjct: 239 SSAKCSVPGFNALGTIAETVLSKSLNSARMATFLL 273
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +2
Query: 437 EAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGDTNAAAEEFLXFVTAARSHLVCE 616
EAVT +E EAEP +II ++ L E TN E+ A L E
Sbjct: 461 EAVTKSTVESSANEEEAEPNEIIEENAVKSLLNQEGPATNEEVEKNNANSENANG-LTDE 519
Query: 617 TIVEIALDHK 646
I+E LD K
Sbjct: 520 KIIEAPLDTK 529
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 398 EYVEDQNDPNYDSEAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGD 550
+Y+E QN P +++E N ++ E+ D++R+ EP+I+E GD
Sbjct: 297 DYIE-QNFP-HEAELRNNDKFHYRYRGGESYM-DVVRRLEPIIMELERQGD 344
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 374 DPTRLCLPPHLSSVTPCRGHCVVFGCSSSYDISGAAS 264
+P + P LSSV G V++G +S + SGAA+
Sbjct: 314 NPASVTYPNVLSSVEISSGLPVIYGMASIFGKSGAAA 350
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 107 VDRIASDSENVAMDEK----PVVEQGAGDAATSNPERLRRKNKKYARSNSK-DGPSAVTP 271
V+ IA + ++ +E P Q + + S R RK K+ A + K D P+AV P
Sbjct: 251 VEEIADEEKHSVKEESGEASPQSSQQSTITSISTTTRSTRKAKREAAAEDKADLPAAVAP 310
Query: 272 LPKYRSWKNSRRPRN 316
P RR ++
Sbjct: 311 KPSKTRKVGGRRGKS 325
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 570 SSAAAFVSPCSKYSNITGSDLRIISSGSASTMTCLNSMSPLVTAS 436
SS++ + S S Y N T + I+S AST+T + + T +
Sbjct: 171 SSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTSTEATTVTTTTA 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,550
Number of Sequences: 5004
Number of extensions: 52350
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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