Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2060
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 57 2e-08
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 42 4e-04
03_02_0200 - 6360682-6362517,6362599-6362670 41 0.001
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 33 0.25
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 33 0.25
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 31 0.75
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 30 2.3
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 3.0
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 3.0
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 29 4.0
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843 29 4.0
09_04_0624 + 19041663-19043792 29 5.3
08_02_0731 - 20483518-20484154,20484182-20484375,20484541-204846... 29 5.3
07_03_1315 - 25722757-25722876,25722972-25723328,25723924-257245... 29 5.3
07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599 29 5.3
05_03_0202 - 9874205-9874762 29 5.3
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 29 5.3
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 28 7.0
06_01_0168 - 1340119-1340232,1340615-1340815 28 7.0
05_07_0086 + 27596517-27596777 28 7.0
05_03_0090 - 8330283-8330831 28 7.0
02_02_0183 + 7576901-7576908,7577666-7578176 28 7.0
12_01_0799 + 7329394-7330125 28 9.3
11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236 28 9.3
11_04_0377 + 16977586-16977843 28 9.3
06_03_0644 - 23107179-23107607,23107661-23107843 28 9.3
06_01_0732 + 5397217-5397327,5399010-5399831 28 9.3
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 28 9.3
03_05_1032 - 29861859-29862011,29862347-29862470,29862557-298627... 28 9.3
02_05_1151 - 34487785-34488688,34489511-34489518 28 9.3
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 56.8 bits (131), Expect = 2e-08
Identities = 34/95 (35%), Positives = 45/95 (47%)
Frame = +2
Query: 410 DQNDPNYDSEAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGDTNAAAEEFLXFVT 589
D+NDPNYDS+ E + V ED + P+I EYF GD AA +
Sbjct: 110 DRNDPNYDSD---EEPYELVEAPVSTPVEDYKKSVAPIIEEYFSTGDVKLAASDLKELGY 166
Query: 590 AARSHLVCETIVEIALDHKAMHCEMASVLISDLYG 694
+ +V +A+D EMASVL+S LYG
Sbjct: 167 DDFHRYFVKKLVSMAMDRHDKEKEMASVLLSSLYG 201
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 506 RKSEPVILEYFEHGDTNAAAEEFLXFVTAARSHLVCETIVEIALDHKAMHCEMASVLISD 685
+++ +I EYF D + + + + ++ IA+D K EMAS+L+S
Sbjct: 437 KEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAMDRKNREKEMASILLSS 496
Query: 686 L 688
L
Sbjct: 497 L 497
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 42.3 bits (95), Expect = 4e-04
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +2
Query: 395 EEY-VEDQND-PNYDSEAVTNGDIEFKQVIVEAEPEDIIRKSEPVILEYFEHGDTNAAAE 568
E+Y +ED + P+ S + NG+ + V A +D R PVI EYF GD AA
Sbjct: 54 EQYNLEDVDSVPSKMSNKLVNGNNK-----VPATLDDYKRLLVPVIEEYFSTGDVELAAS 108
Query: 569 EFLXFVTAARSHLVCETIVEIALDHKAMHCEMASVLISDLY 691
E + + ++ +A+D EMAS+L+S LY
Sbjct: 109 ELRSLGSDQFHSYFIKKLISMAMDRHDKEKEMASILLSALY 149
>03_02_0200 - 6360682-6362517,6362599-6362670
Length = 635
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 506 RKSEPVILEYFEHGDTNAAAEEFLXFVTAARSHLVCETIVEIALDHKAMHCEMASVLISD 685
RK+ ++ EYF D A A E + + +V +A+D EMA+VL+S
Sbjct: 44 RKATTILEEYFSTDDVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLLSS 103
Query: 686 LYG 694
LYG
Sbjct: 104 LYG 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +2
Query: 461 EFKQVIVE--AEPEDIIRKSEPVILEYFEHGD-----TNAAAEEFLXFVTAARSHLVCET 619
E K+ +VE A K+ +I EYF GD ++ AE + +++ + + +
Sbjct: 328 EPKKAVVEDDAAVRQFKAKTLSIIKEYFLTGDIIEVMSSLEAENYAC--SSSYNAIFVKK 385
Query: 620 IVEIALDHKAMHCEMASVLISDL 688
++ A+D K+ EMASVL+S L
Sbjct: 386 LITSAMDRKSREKEMASVLLSSL 408
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 443 PPPNRSSDRSGPPRTPRASQIRADPTRLCLPP-HLSSVTPCRGHCVVFGCSSSYDISGAA 267
PPP + PR P A+ + + PP +L+S T + + +SS + +
Sbjct: 253 PPPRNLVSTTPVPRNPIAANVASSSVAAASPPRNLASTTKVSQNSIAANLASSSVSATST 312
Query: 266 SQRSARPCC 240
+ R A P C
Sbjct: 313 ASRGAAPAC 321
>05_03_0657 +
16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 107 VDRIASDSEN-VAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTPLP 277
VD +D N ++ + P+V+ DA+TS+P + ++K+ N D ++ TPLP
Sbjct: 492 VDTADTDHHNELSQADHPMVDSDVADASTSSPSSIVSESKESTDKNDSD--TSKTPLP 547
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 623 QLSRTPDDSSRRSQSXGTPRRPRS 552
Q SR+P DS S S G+PRR RS
Sbjct: 19 QRSRSPSDSEEASDSSGSPRRSRS 42
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 167 QGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTPLPKYRSWKNSRRPRN 316
+G + + +P R R + + Y+RS S+ + +P R+ + SR PR+
Sbjct: 136 RGRSYSRSPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRD 185
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 668 RPFRSASPCDPTLSPQLSRTPDDSSRRSQSXGTPRRPRS 552
+P RS+ C P SP+++ +P SSR +P PRS
Sbjct: 307 QPSRSSPECSPIPSPRMT-SPGPSSRVHSGSVSPLHPRS 344
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 349 GGRQRRVGSARI*DARGVRGGPERSELRFGGGHQRRHR 462
GG+ RR+G + +G+ G PE SE GG + + R
Sbjct: 118 GGQTRRMGKRKTIVQKGMLGKPEPSEKTRGGSQRAKKR 155
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 95 AAMEVDRIASDSENVAMDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTP 271
A D +S E +DE VVE G D ++ + ++K +K R K P +P
Sbjct: 63 AGFAADAFSSGDE---IDEDAVVELGEADPSSRKRRKEKKKRRKEKRKQRKGAPPEGSP 118
>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
Length = 588
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 344 LSSVTPCRGHCVVFGCSSSYDISGAAS 264
+SS T GH + F SS+ D SGAA+
Sbjct: 93 MSSFTDLAGHGIAFAVSSTRDFSGAAA 119
>09_04_0624 + 19041663-19043792
Length = 709
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 95 AAMEVDRIASDSENVAM--DEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVT 268
AAME+++ ++ VAM D KP E+G G PE NK+ ++ K G AV
Sbjct: 256 AAMEIEKPQEAAQPVAMEVDGKPEKEKGVG----GKPE-----NKEVSKKARKAGKFAVQ 306
Query: 269 PLPKY 283
L +Y
Sbjct: 307 SLERY 311
>08_02_0731 -
20483518-20484154,20484182-20484375,20484541-20484640,
20485282-20485622
Length = 423
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 461 RCRRW*PPPNRSSDRSGPPRTPRASQIRADPT 366
R RW PP RSS PP +PR RA PT
Sbjct: 276 RLSRWLHPPRRSSS-PVPPPSPRRILRRARPT 306
>07_03_1315 -
25722757-25722876,25722972-25723328,25723924-25724500,
25724577-25725265,25725487-25725822,25726190-25726527,
25726619-25726746,25726906-25727030,25727547-25727589,
25727714-25727802,25728396-25728511,25729157-25729276,
25729752-25729794
Length = 1026
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 152 KPVVEQGAGDAATSNPERLRRKNKKYARSNSKDG--PSAVTPLPKYRSWKNSR 304
K VVE G D S+ L + K A+ DG +AV K+R WK +
Sbjct: 803 KKVVEYGDDDCGLSDERTLSLVSIKNAKPGQNDGSHSAAVRIQNKFRGWKGRK 855
>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
Length = 243
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 119 ASDSENVAMDEKPVVEQGAGDAATSNPERLRR 214
A+D+E +PV +G+G AAT+ E+ RR
Sbjct: 175 AADAEVTNTPRRPVEARGSGSAATTRMEKSRR 206
>05_03_0202 - 9874205-9874762
Length = 185
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = +1
Query: 337 EERWGGRQRRVGSARI*DARGVRGGPERSELRFGGGHQRRHRIQAGHSRSGAR 495
EER G RQ R R RGG + G G R ++A + G R
Sbjct: 108 EEREGRRQERASGGHRAKRRAGRGGGGGGDAGGGDGAAGRRTVEAAQAAGGGR 160
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 8 KVFIERHNRVHSFCLTVLKSIFHKINRTVAAMEVDRIASDSENVA 142
K+ + N++ + + +IFHK+N+T A E++ ++ N++
Sbjct: 184 KICLSGPNKLSEELIRLTVNIFHKLNKTTNAAELEMSSTSKLNIS 228
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 28.3 bits (60), Expect = 7.0
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Frame = +1
Query: 403 RGGPERSELRFGGGHQRRHRIQAGHSRSGARGYYP*IGACDIRVF*AWRHERGRRGVPXL 582
RGG GG Q R + G R+GA G + GA R RH R RRG L
Sbjct: 98 RGGRWTVTPGVDGGAQERV-VGGGRRRAGAGGGWRHAGAGGRR-----RHRRARRGAVRL 151
Query: 583 CDRREESSGVRD-NCGDS----------VGSQGDALRNGLGPHIRFVW 693
RR++ R +CG + +G AL +G+ FVW
Sbjct: 152 RRRRQQWRRRRTRSCGRTGWHNATVATVIGDGRIALLSGISAQDLFVW 199
>06_01_0168 - 1340119-1340232,1340615-1340815
Length = 104
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +1
Query: 397 GVRGGPERSELRFGGGHQRRHRIQAGHSRSGARGYYP*IGACDIRVF*AWRHERGRRGV 573
G GG + + GGG QR + H R R + P GA D R WR RG RG+
Sbjct: 13 GEAGGGDAAPDDDGGGEQRP--VAVDHRRR--RSFAP--GAAD-RSMGDWRRRRGERGI 64
>05_07_0086 + 27596517-27596777
Length = 86
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 334 TEERWGGRQR---RVGSARI*DARGVRGGPERSELRFGGGHQRRHRIQAGHSR 483
+ RWGGR++ R G R GV GG E FGGG ++A R
Sbjct: 34 SRRRWGGRRQRWWRRGRGRGDGEEGVEGGGEGG--GFGGGEDGGGEVEAAVER 84
>05_03_0090 - 8330283-8330831
Length = 182
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 437 PNRSSDRSGPPRTPRASQIRADPTRLCLPPHLSSV 333
P SS RSGPP PR ++IR P + P + V
Sbjct: 2 PRLSSSRSGPPH-PRWAKIRQGPATSSVTPTKTKV 35
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 358 QRRVGSARI*DARGVRGGPERSELRF-GGGHQRRHRIQAGHSRSGARGYYP*IGACDIR 531
+RR G R RG GG R R GGG +RR R G AR + CD R
Sbjct: 27 RRRYGGGRWEYGRGGGGGWIRRPARQRGGGGRRRRRRCGGGGGGAARWIRQPLARCDRR 85
>12_01_0799 + 7329394-7330125
Length = 243
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 201 SGLDVAASPAPCSTTGFSSIA-TFSESEAMRSTSIAATVRFIL*NMDFNT 55
SG +VAA+P+P + G IA T E + R + +R + + NT
Sbjct: 16 SGSNVAATPSPSAVVGNGDIASTAQEMQRARYFTFVMLIRMVQEKIPHNT 65
>11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236
Length = 439
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 143 MDEKPVVEQGAGDAATSNPERLRRKNKKYARSNSKDGPSAVTPLPKYRS 289
+D++ VVE G+G ++P R+ + + + D S P+ Y++
Sbjct: 28 LDKEKVVEGGSGSGTRTSPRFTRQSSNRPVQIRDGDSGSRENPVRLYKT 76
>11_04_0377 + 16977586-16977843
Length = 85
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 146 DEKPVVEQGAGDAATSNPERLRRKNKK 226
DEK ++EQ AAT+ E LRRKN++
Sbjct: 4 DEKTILEQQIA-AATARLEELRRKNRE 29
>06_03_0644 - 23107179-23107607,23107661-23107843
Length = 203
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 544 WRHERGRRGVPXLCDRREESSGVRDNC 624
W RGRRG + ++ ++GVR C
Sbjct: 148 WMRRRGRRGEAGMAAGKDAATGVRTRC 174
>06_01_0732 + 5397217-5397327,5399010-5399831
Length = 310
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 313 QWPRQGVTEERWGGRQRRVGSARI*DARGVRGGPERSELRFGGGHQRRHRIQAGHSR 483
Q P++ EE GG G R + R S+ GGHQ H+ + H+R
Sbjct: 89 QLPKEEAEEEAGGGAAAAAGETRRFECHYCRRNFPTSQAL--GGHQNAHKRERQHAR 143
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.9 bits (59), Expect = 9.3
Identities = 29/89 (32%), Positives = 33/89 (37%)
Frame = -3
Query: 617 SRTPDDSSRRSQSXGTPRRPRSCLHAQNTLISQAPIYG*YPRAPLRL*PA*IRCRRW*PP 438
SR P RR PRR RS H +PI P RL P RR P
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPP----RRMWSP 360
Query: 437 PNRSSDRSGPPRTPRASQIRADPTRLCLP 351
P R R+P IR+ P+R P
Sbjct: 361 PRRPQSLRHRSRSPIHRPIRS-PSRSISP 388
>03_05_1032 -
29861859-29862011,29862347-29862470,29862557-29862759,
29863081-29863199,29863489-29863623,29863695-29863950,
29864749-29864880,29865001-29865222
Length = 447
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = +3
Query: 279 NIVAGRTAEDHAMATAGGYRRKVGREAKACGV 374
N A A A A AGG RRK GR A A GV
Sbjct: 11 NGAAPAPAPAAAAAAAGGKRRKRGRWAAAAGV 42
>02_05_1151 - 34487785-34488688,34489511-34489518
Length = 303
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 562 RRGVPXLCDRREESSGVRDNCGDSVGSQGD-ALR 660
RRG + D+R + G +N GDS+ S G+ ALR
Sbjct: 3 RRGGRGVGDQRRQKKGGEENRGDSMSSGGELALR 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,648,778
Number of Sequences: 37544
Number of extensions: 439529
Number of successful extensions: 2047
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2042
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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