Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2058
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 31 0.78
10_08_0168 - 15379897-15380819,15381306-15381894 31 1.4
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 30 2.4
03_05_0655 + 26491238-26491696 29 4.1
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745... 29 4.1
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 29 5.5
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859... 29 5.5
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 5.5
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 9.6
10_08_0861 - 21139173-21139613 28 9.6
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 9.6
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 28 9.6
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305... 28 9.6
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 31.5 bits (68), Expect = 0.78
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 197 GSGIDDKLIPNEFPDLIEFSKESPEGNGDM-PIETVKVVGLRKVPGQPLGLTVTTDEHGQ 373
GS + DK+I E P + F E D+ P +V + KV GL+ + H +
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 374 LIVARILAGSAAAKQALVSVGDVLLEVDG 460
++ + AKQ + G ++ DG
Sbjct: 252 ILGYLLYVAKVVAKQEGLEDGYRIVINDG 280
>10_08_0168 - 15379897-15380819,15381306-15381894
Length = 503
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 371 QLIVARILAGSAAAKQALVSVGDVLLEVDGV-HIESEEQLKEAVAKPNDRVTLKVGP 538
+L+V AG A + V G+V ++GV H E E L+E V K + V P
Sbjct: 421 RLVVREWRAGVAVGDRGAVDAGEVRARIEGVMHGEEGEVLREQVGKMRATLHAAVAP 477
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 412 CCCTSCKYPCNNKLSMLIGCHSQT*RLSWYFSKTYNFYCFYRHISVTLGT 263
C C +C+ L+ L+ H ++ T+++ CF+R I T+ T
Sbjct: 324 CSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFFRLIRDTIKT 373
>03_05_0655 + 26491238-26491696
Length = 152
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 194 RGSGIDDKLIPNEFPDLIEFSKESPEGNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQ 373
RG G + P E P L F + GN P K++GL G LGL ++ G
Sbjct: 73 RGGGAAAAVRPEEDPFLAAFLACTERGNRGTPKGGSKLLGLGLGLGSGLGLGLSCKGPGG 132
Query: 374 LIVARILAGSAAAKQAL 424
++ + + QAL
Sbjct: 133 VVQSVVRLAKTMPPQAL 149
>03_02_0323 -
7450996-7451229,7451320-7451469,7451571-7451718,
7451816-7451895,7451990-7452150,7452417-7452665,
7452747-7453211,7453306-7453421,7453529-7453647,
7453749-7453834,7453970-7454120
Length = 652
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +2
Query: 446 LEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLXEKSSQLTNKLTCYVRTLFDYYPTQDT 625
L +DGV E + A+ DRV V ++ KS +RTL DY +
Sbjct: 17 LHMDGVGKELLQWALNEAARSGDRV---VAVHIYRKSDNCKTNTLSLIRTLDDYLAEYEA 73
Query: 626 LIPXKEIGL 652
L K+I L
Sbjct: 74 LCSKKDIVL 82
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 380 VARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLXEKSS 559
+AR ++G A ++ +L D + + +H+ +E LK+ V+ PN +L ++
Sbjct: 527 MARTMSGPATSETSLPV--DRPMRLSEIHVAAEHALKQTVSDPNFMTSLSSLEEFEKRYM 584
Query: 560 QLT 568
+LT
Sbjct: 585 ELT 587
>06_03_0468 -
21083754-21083869,21083986-21084069,21085633-21085920,
21087525-21087687
Length = 216
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 369 PCSSVVTVKPKGCPGTFLRPTTFTVSIGISPL 274
P S V V+PK CPG R + F ++PL
Sbjct: 68 PTSGVFEVEPKCCPGFMYRCSIFIGRTSLNPL 99
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 170 QIGKIWLERGSGIDDKLIPNEFPDLIEFSKESPEGNGDM 286
++ +IW+ERG G KL+ ++ L +S+ + D+
Sbjct: 355 KLSQIWIERGLGFPSKLVMDDSMPLHAWSRSAVASESDL 393
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 44 GNVNIIRSLSEYRGNNIRTIEQAELAIIVSRAHFKALIEAHDQIGKIWLERG-SGI 208
GN ++ S+ G N I + ++S H K L AH ++ KIW+ G SGI
Sbjct: 80 GNTEVVAIQSKENGRNSNNILEDGEKSVLSSDHSKKL-SAHHRL-KIWITSGHSGI 133
>10_08_0861 - 21139173-21139613
Length = 146
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = +2
Query: 272 GNGDMPIETVKVVGLRKVPGQPLGLTVTTDEHGQLIVARILAGSAAAKQALVSVGDVLLE 451
G+G PI+ +K+ V LG+ V HG +LAG A A A+ V
Sbjct: 61 GHGRCPIDALKLRVCANVLNGALGVNVG---HGPYDCCPLLAGLADADAAVCLCTAVKAN 117
Query: 452 VDGVHIESEEQLK 490
V GV++ +LK
Sbjct: 118 VLGVNLNVPVELK 130
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 375 SCPCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLSFENSIRSGN-SFGI-NLSSIP 202
S P ++ V G P FL TT + I +P G I G G+ +++ +
Sbjct: 349 SIPTGEMMPVS--GSPFNFLTETT--IGSRIDQVPGGYDHNFVIDCGEVKSGLCHVAKVT 404
Query: 201 DPLSNQILPIWS 166
DP S+++L IW+
Sbjct: 405 DPSSSRVLDIWA 416
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 374 LIVARILAGSAAAKQALVSVGDVLLEVDGVHIESEEQLK 490
LIV + GS A K V VGDV+ +G HI S +L+
Sbjct: 506 LIVKEVSEGSIAEKLG-VRVGDVIKFFNGKHISSTVELE 543
>04_04_0124 +
22929700-22929761,22930192-22930310,22930459-22930541,
22930640-22930738,22930769-22930786,22931044-22931110,
22931244-22931319,22931450-22931516,22932303-22932520,
22933124-22933191,22933743-22933822,22934362-22934448,
22934524-22934631,22934753-22934848,22935045-22935140,
22936826-22937155
Length = 557
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Frame = +2
Query: 377 IVARILAGSAAAKQALVS----------VGDVLLEVDGVHIESEEQLKEAVAK--PNDRV 520
++ ++ GSAAAK LV +GDV++ VDG I+ + L + D+V
Sbjct: 345 LILQVPGGSAAAKAGLVPTSRGFAGNIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKV 404
Query: 521 TLKV--GPNLXEKSSQLTNKLTCYVR 592
+L + G E Q T++ +R
Sbjct: 405 SLTIQRGAETLEMVPQYTSEFLLIIR 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,671
Number of Sequences: 37544
Number of extensions: 369728
Number of successful extensions: 880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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