Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2057
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    41   2e-04
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   2.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   5.0  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    26   5.0  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   8.7  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   8.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.7  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
 Frame = +2

Query: 185 LEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISF---WDVQA 355
           L K V+P  Y L L P L+   Y G V + L  L++S+ ++LH  +   ++    W  Q 
Sbjct: 20  LPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQT 79

Query: 356 YPASDAEHPVERVVVK--ELRMDVKKPILTLYFEKPIPKGTEGHIELTY 496
             AS+  +  ER+V++           +LTL F   I  G EG    +Y
Sbjct: 80  VWASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSY 128



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNARRMFPCF 629
           GF++S+Y    G    +A TQ+ P +ARR FPC+
Sbjct: 122 GFYRSSYVDSDGNTKYLATTQMEPTSARRAFPCW 155


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 599 WTKLCGCYHNLFTXTCRVRGFEKSXGDTQCEYCLDTSTLYVLR 471
           W+ +CGCY N  T TC     E    D    Y       Y ++
Sbjct: 229 WSTVCGCYKN--TYTCSQTCLEDEVQDDSRYYSASLDIFYSVK 269


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 281 WLQESDELSLHCDHELGISFWDVQAYPAS--DAEHPVERVVVKE 406
           ++ +S E      +  GI FWD   YP     +E P+  V +K+
Sbjct: 463 YISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKD 506


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNAR 611
           G F   YTTG  +E +V   Q+R  N R
Sbjct: 474 GLFTGEYTTGASKEYLVHLEQMRIANNR 501


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 425 KPILTLYFEKPIPKGTEGHIELTYRGNIH 511
           K I  L    PIP+G +   EL+Y+ N H
Sbjct: 77  KHISKLPIASPIPRGLDRSGELSYKDNNH 105


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 164 GLAMETRLEKIVEPTGYKLDLEPFLDDGVYRG 259
           G+A  T L KIV+  G KLD+    D GV  G
Sbjct: 309 GVASLTMLPKIVDAVGDKLDV--LFDSGVRSG 338


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 624 CFRRAGIQDPVRNQRSTTPEHGSPQQYXDRENRXITGEPN 743
           CF   G+ D V       P+  SP+Q  +  N      PN
Sbjct: 557 CFSDVGLTDQVAIFTPAVPKEDSPEQIPENVNASEESYPN 596


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 107 LPVGGNTPRKLPEPQAGSLLYSSCXNP 27
           LP+  NTP + PE +  SL  +S  NP
Sbjct: 110 LPLSINTPAQWPEKEVYSLQGTSIFNP 136


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 637 PGYKTPFEISVARPXNM 687
           PGYK P+E+ V +P ++
Sbjct: 348 PGYKQPWELDVGKPYHI 364


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 519 VTXGFFKSTYTTGXGEEIMVAATQLRPNNARRMFP 623
           +T GF+ +T+TTG       + T +  +N+  +FP
Sbjct: 169 ITTGFYNTTFTTGY---FNTSVTSVAVHNSTTVFP 200


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -3

Query: 517 PNVNIASIRQLYMSFGSLGDRFFEIQSQYRLFDVHTKLLHNDTFYWMFRVRRWIR 353
           P ++  S+R+   +FG L   F E+  +   +D     +HN  FY+  +   W++
Sbjct: 422 PRLSTGSMRE-EDNFGVLLLEFLELYGKQFYYDAVGIAVHNGGFYFSKKKMGWLK 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,508
Number of Sequences: 5004
Number of extensions: 64603
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)