Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2057
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 36 0.034
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 36 0.034
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 36 0.045
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 35 0.060
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.98
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 30 2.3
08_02_0385 + 16574553-16574885 29 3.0
09_04_0414 - 17393780-17394826 29 3.9
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 9.1
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 9.1
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 9.1
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 35.9 bits (79), Expect = 0.034
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 616 CSPAFDEPGYKTPFEISVARPXNMVALNNTXIA 714
C P +DEP +K F++++ P +VAL+N +A
Sbjct: 149 CFPCWDEPAFKAKFKLTLEVPSELVALSNMPVA 181
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNARRMFPCF 629
GF++S Y GE +A TQ +ARR FPC+
Sbjct: 121 GFYRSKYEY-KGETKNMAVTQFEAVDARRCFPCW 153
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 35.9 bits (79), Expect = 0.034
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNARRMFPCF 629
GF++S Y GE+ +A TQ P +ARR FPC+
Sbjct: 124 GFYRSVYELN-GEKKNMAVTQFEPADARRCFPCW 156
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 616 CSPAFDEPGYKTPFEISVARPXNMVALNNTXIARTXI 726
C P +DEP +K F+I++ P VAL+N + +
Sbjct: 152 CFPCWDEPSFKAIFKITLEVPSETVALSNMPVVEEKV 188
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 35.5 bits (78), Expect = 0.045
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 616 CSPAFDEPGYKTPFEISVARPXNMVALNNTXIARTXI 726
C P +DEP +K F++++ P +VAL+N I I
Sbjct: 143 CFPCWDEPSFKAKFKLTLEVPSELVALSNMPIVNEKI 179
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNARRMFPCF 629
GF++S Y GE +A TQ +ARR FPC+
Sbjct: 115 GFYRSKYEY-KGETKNMAVTQFESVDARRCFPCW 147
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 35.1 bits (77), Expect = 0.060
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 616 CSPAFDEPGYKTPFEISVARPXNMVALNNTXIARTXI 726
C P +DEP +K F++++ P +VAL+N + + +
Sbjct: 139 CFPCWDEPAFKAKFKLTLEVPSELVALSNMPVIKETV 175
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 528 GFFKSTYTTGXGEEIMVAATQLRPNNARRMFPCF 629
GF++S Y GE +A TQ +ARR FPC+
Sbjct: 111 GFYRSKYEY-KGESRNMAVTQFEAADARRCFPCW 143
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 31.1 bits (67), Expect = 0.98
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 107 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLEPFLDDGVYR 256
E+S IIK +D N + TR+ ++ E G ++EP DD R
Sbjct: 276 EISTWDIIKCAIVDSNCGSRVIATTRISQVAEEVGDIYNMEPLSDDNSKR 325
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -3
Query: 460 DRFFEIQSQY--RLFDV-HTKLLHNDTFYWMFRVRRWIRLYV 344
DR F+ Q Q+ +L+D+ H ++H FY +FR R ++Y+
Sbjct: 765 DRLFKEQMQHIIQLWDLCHVSIIHRTQFYLLFRGDRADQIYI 806
>08_02_0385 + 16574553-16574885
Length = 110
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 263 VKIQLKWLQESDELSLHCDHE 325
+KI ++W++E +L L CDH+
Sbjct: 47 MKIMMRWMREKQKLRLICDHD 67
>09_04_0414 - 17393780-17394826
Length = 348
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +2
Query: 215 KLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHPVERV 394
K D PFL + Y+ ++K L +D ++ D G+S DV PA+D R+
Sbjct: 40 KFDFSPFLIE--YKSG---RVKRLMGTDVVAASADVLTGVSSRDVAIDPANDVR---ARL 91
Query: 395 VVKELRMDVKKPILTLYF 448
+ R K P+L LYF
Sbjct: 92 YLPSFRATAKVPVL-LYF 108
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 110 VSASHIIKARSIDLNNAYGLAME--TRLEKI-VEPTGYKLDLEPFLDDGVYRGTVKIQLK 280
V AS ++ ++DL + +RLE + E D+E F + V TVKIQ
Sbjct: 228 VEASQALEKEALDLESKRTKLTSGPSRLEALQAEKEALTADVEKF-EAVVKSWTVKIQ-- 284
Query: 281 WLQESDELSLHCDHELGISFWDVQAYPASDAE 376
E +E S+H + EL D Q A + E
Sbjct: 285 ---EKEESSVHLEKELEAKLMDQQRIAAENEE 313
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 181 PFGEDRGADWIQA 219
PFG+DRG DW Q+
Sbjct: 1441 PFGQDRGGDWSQS 1453
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.9 bits (59), Expect = 9.1
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +2
Query: 371 AEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHIGCHRXIFQIHVH 550
+E P + V +L+MDVK L I GT+G++ T R N+ G I + HV
Sbjct: 776 SELPDQNNKVGQLKMDVKIDPRPLQKPAKIGYGTDGNVP-TARHNVAPGGSNEI-KTHVK 833
Query: 551 DRSX*RDYGSSHTASS-KQRAAYVPLLSTSRDTRPRSK 661
D +S TA K A ++ S+ +P+ K
Sbjct: 834 QEIMPIDKETSETAPEVKNEANDSTDITVSKSGKPKIK 871
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,196
Number of Sequences: 37544
Number of extensions: 458367
Number of successful extensions: 1254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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