Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2057
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.11 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.11 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    28   0.11 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    28   0.11 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    28   0.11 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.25 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.33 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.3  

>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 101 YVPPGIFKSTCKIDIAWFPFDDQ---HCDMKFGSWTYD 135


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 135


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 135


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 203


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 203


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T K+ + W    D+   HCD + G   +D
Sbjct: 101 YVPPGIFKSTCKMDIAWFPFDDQ---HCDMKFGSWTYD 135


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G++  T KI + W    D+   HCD + G   +D
Sbjct: 101 YVPPGIFGSTCKIDIAWFPFDDQ---HCDMKFGSWTYD 135


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 233 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 346
           ++  G+++ T KI + W    D+    C+ + G   +D
Sbjct: 138 YVPPGIFKSTCKIDITWFPFDDQ---RCEMKFGSWTYD 172


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +1

Query: 565 KRLW*QPHSFVQTTRGVCSP---AFD 633
           +RLW      V  T+ +CSP   AFD
Sbjct: 138 ERLWVLDSGLVNNTQPMCSPKLFAFD 163


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 421 QKADIDFVFRKTDPQGNRRTYRVDVSRQYSHWVSPXDFS 537
           QKA+   +F K D + + +     +   YS W    D++
Sbjct: 177 QKANHALIFGKLDTKTSGKYKEYIIPANYSGWYLNHDYN 215


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 421 QKADIDFVFRKTDPQGNRRTYRVDVSRQYSHWVSPXDFS 537
           QKA+   +F K D + + +     +   YS W    D++
Sbjct: 177 QKANHALIFGKLDTKTSGKYKEYIIPANYSGWYLNHDYN 215


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 463 GDRFFEIQSQYRLFDVHTKLLHND 392
           GDRF +  +  R +     + HND
Sbjct: 174 GDRFLQAANAXRFWPTGRGIYHND 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,266
Number of Sequences: 438
Number of extensions: 5079
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)