Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2056
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    30   0.41 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.54 
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    29   0.54 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.54 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.72 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.95 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   1.3  
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    28   1.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.7  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    27   2.2  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   3.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.1  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   6.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    26   6.7  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    26   6.7  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.9  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   8.9  

>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 501 GHRRGELTVLTGPTGCGKTTLCAEISLDLAQQGINTLW 614
           G +RG ++ + G  G GKT+L  +I+ +    G   +W
Sbjct: 40  GLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIW 77


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 516  ELTVLTGPTGCGKTTLC 566
            E  +L G TGCGKTT+C
Sbjct: 1187 EPVLLVGDTGCGKTTVC 1203


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 432 LTNIDKVRGVKWRRFPALTRLLGGHRRGELTVLTGPTGCGKTTLCAEI 575
           L +++ +  V W R   L+ +    R GE   LTG  G GKTTL A +
Sbjct: 264 LISMEHLNCVYWGR-KVLSDINWTIREGERWALTGSNGSGKTTLLAYV 310


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTLC 566
           LT   GG    E+ VL G  G GKTT C
Sbjct: 365 LTIKSGGFSDAEIIVLLGENGTGKTTFC 392


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -1

Query: 550 PHPVGPVS------TVSSPRLWPPSSRVSAGNL 470
           P P+ PVS      + S P L PPSSRVSA  L
Sbjct: 272 PRPIAPVSMNPAINSTSKPPLPPPSSRVSAAAL 304


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
 Frame = +3

Query: 303 GLVTATEAAGAGLSLKTLVSDAKPAAHRSITT-FAALR--DDVYAELTNIDKVRGVKWRR 473
           G+    E +G   ++ T  ++ +P   R+I   F+ ++  D+   EL  I     V + R
Sbjct: 234 GMSIFAETSGLN-NIMTNTTEQEPMEERAINVRFSDVQGVDEAKEELEEI-----VDFLR 287

Query: 474 FPA-LTRLLGGHRRGELTVLTGPTGCGKTTLCAEIS 578
            P   TRL G   RG L  LTGP G GKT L   ++
Sbjct: 288 DPTHFTRLGGKLPRGVL--LTGPPGTGKTMLARAVA 321


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 489 RLLGGHRRGELTVLTGPTGCGKTT 560
           +LL    + ++T++ G TGCGKTT
Sbjct: 33  QLLYAVEQNQITIVLGHTGCGKTT 56


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 41   HNAGLFSCRIQRGSRSDQAILVPTVQDVLSLAAHKVPGTFIWLSNCSLPLVVLP 202
            H   L++  +QR S SDQ  L       LS    K+P  FI+ + C L   ++P
Sbjct: 879  HMVELYNTLLQRLSSSDQVDLQCRYLHELSEFIKKIPKEFIFHTICKLSKGLIP 932


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 510 RGELTVLTGPTGCGKTTLCAEISLDLAQQGINT 608
           R  + ++ G  G GKTT C++++L   ++G+ +
Sbjct: 100 RPSVIMMVGLQGSGKTTTCSKLALHYQRRGLKS 132


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
 Frame = +3

Query: 414  DDVYAELTNIDKVRGV-KWRRFPALTRLLGGHRR-----------GELTVLTGPTGCGKT 557
            +++  E   I+K   +  WR      ++ G HRR           G+LT L G +G GKT
Sbjct: 866  EELNKEYEGIEKGHDIFSWRNLNYDIQIKGEHRRLLNGVQGFVVPGKLTALMGESGAGKT 925

Query: 558  TL 563
            TL
Sbjct: 926  TL 927


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 492 LLGGHRRGELTVLTGPTGCGKTTLCAEISL 581
           L GG   G+LT + G +G GK+  C ++ L
Sbjct: 86  LHGGIPVGQLTEICGESGSGKSQFCMQLCL 115


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +3

Query: 510 RGELTVLTGPTGCGKTTLCAEISLDLA 590
           R +L+++ GPTG GK++L + +  +L+
Sbjct: 640 RNKLSIVIGPTGSGKSSLISALLGELS 666


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTLCAEI 575
           L  +L G + G LT++ GPT CGK  L  ++
Sbjct: 732 LESILRGSQPG-LTMVNGPTRCGKHVLVCKL 761


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 326  SWSRLIIEDPGVRCEASGASIYHDLR 403
            SW +L++ DP   CE   + I+  +R
Sbjct: 2220 SWLKLVLADPKKSCEKEFSKIWESMR 2245


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 495 LGGHRRGELTVLTGPTGCGKTTLCAEISLDLAQQ 596
           L G  +G++  L GP G GKT++   I+  L ++
Sbjct: 565 LRGTMQGKIMCLVGPPGVGKTSVGKSIASALNRE 598


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 477 PALTRLLGGHRRGELTVLTGPTGCGKTTLCAEISLDLAQ 593
           P+  + L  HRRG+    + PT   +  L  ++S   +Q
Sbjct: 524 PSSIKSLSWHRRGDYLATSSPTSSSQAVLIHQLSRGASQ 562


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 519 LTVLTGPTGCGKTTLCAEISLDLAQQGINTL 611
           L ++ GP+GCGK+T    ++ +L    I  L
Sbjct: 107 LLLICGPSGCGKSTAVQVLAKELGYSLIEWL 137


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 492  LLGGHRRGELTVLTGPTGCGKTTLCAE--ISLDLAQQG 599
            +LGG     + VLTGP   GK+TL  +  I++ +AQ G
Sbjct: 1011 VLGGESPN-MIVLTGPNMAGKSTLLRQVCIAVIMAQLG 1047


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 266 EKLGEERCRFVRWARDSNRSSWSRLIIEDPGVRCE 370
           +KLG +     +W +D+  S  S  + EDP ++ E
Sbjct: 725 KKLGNQYYNDTQWLKDNLDSHLSHTLSEDPLIKVE 759


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 516 ELTVLTGPTGCGKTT 560
           +L +++G TGCGK+T
Sbjct: 648 QLLIISGDTGCGKST 662


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 471 RFPALTRLLGGHR-RGELTVLTGPTGCGKTTLCAEISLDL 587
           + P + +  G H  RG L  L GP GCGKT L   ++ +L
Sbjct: 195 KHPEVYQYTGIHPPRGVL--LHGPPGCGKTMLANALANEL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,494
Number of Sequences: 5004
Number of extensions: 56136
Number of successful extensions: 206
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)