Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2056
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40412-4|AAV28342.1| 618|Caenorhabditis elegans Hypothetical pr... 75 4e-14
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 33 0.22
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 32 0.38
Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical pr... 30 2.1
U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related... 29 3.6
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related... 29 3.6
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 29 4.7
AC006774-8|AAY43992.1| 295|Caenorhabditis elegans Hypothetical ... 29 4.7
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 28 6.3
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 28 6.3
Z98866-7|CAB11549.1| 454|Caenorhabditis elegans Hypothetical pr... 28 8.3
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 28 8.3
U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical p... 28 8.3
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 28 8.3
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 28 8.3
>U40412-4|AAV28342.1| 618|Caenorhabditis elegans Hypothetical
protein F46G11.1 protein.
Length = 618
Score = 75.4 bits (177), Expect = 4e-14
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 342 SLKTLVSDAKPAAHRSITTFAALRDDVYAELTN-IDKVRGV-KWRRFPALTRLLGGHRRG 515
SL V + RS+T +R+ + ++L N ++V G +W+RF L + LGG R G
Sbjct: 266 SLSNSVVRMRERGFRSMTDLD-MREGIRSDLLNSTNRVVGFGQWKRFAVLNKYLGGLRPG 324
Query: 516 ELTVLTGPTGCGKTTLCAEISLDLAQQGINTLWGQFXRLRNSRLARTMLXQSAG 677
E+TVLTG TG GKTT E SLDL QG+ TL+ F + ++ ML Q AG
Sbjct: 325 EMTVLTGGTGNGKTTFLCEYSLDLFTQGVRTLFCSF-EMPEKKILHWMLVQYAG 377
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 336 GLSLKTLVSDAKPAAHRSITTFAALRDDVYAELTNIDKVRGVKWRRFPALT--RLLGGHR 509
G+++K +V + + H IT L D + AE + V V R+ L + G
Sbjct: 6 GINVKDIVKVERTSVHSHITGLG-LNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKI 64
Query: 510 RGELTVLTGPTGCGKTTLCAEISLDLAQ 593
G ++TG G GKT + IS +L +
Sbjct: 65 AGRALLVTGEPGAGKTAIAIAISKELGE 92
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTL 563
L + G R GE+T + GP+G GKTTL
Sbjct: 82 LDSVFGVARPGEVTAIIGPSGAGKTTL 108
>Z69787-8|CAA93640.1| 127|Caenorhabditis elegans Hypothetical
protein C44C10.10 protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 513 GELTVLTGPTGCGKTTLCAEISL 581
G++T +TGP GCGK+ L I +
Sbjct: 71 GKITTITGPNGCGKSALVRAIGI 93
>Z69635-6|CAA93461.1| 695|Caenorhabditis elegans Hypothetical
protein F19B6.4 protein.
Length = 695
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTL 563
L ++ G R GELT + G +G GKTTL
Sbjct: 119 LKKIDGVARPGELTFIMGSSGAGKTTL 145
>U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical
protein C01B10.4 protein.
Length = 580
Score = 29.9 bits (64), Expect = 2.1
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Frame = +2
Query: 8 GNEDQIQCYGF-HNAGL-----FSCRIQRG-SRSDQAILVPTVQDVLSLAAHKVPGT--F 160
GN +I +G + GL FS I R S QAI++ L H + GT F
Sbjct: 192 GNSQKITLFGHSYGGGLASMMTFSSEINRDLSLFQQAIVMSGGFYFEELKDH-IEGTKRF 250
Query: 161 IWLSNCSLPLVVLPTLE-NHQKLYLWGEWDNMRAVAEKLGEERCRFVRWARDSNRSSWSR 337
+ +NCS+PL + +E + Q++Y+ M+ + + G E R R D +
Sbjct: 251 VEYANCSVPLKLERKMERSQQEMYM------MKCLQKLSGMELLRIQRLLEDKGYPDFGG 304
Query: 338 LIIEDP 355
+I+ +P
Sbjct: 305 VILREP 310
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 519 LTVLTGPTGCGKTTLCAEISLDLA 590
L +LTGP G GKT+LC ++ L+
Sbjct: 174 LILLTGPPGTGKTSLCKGLAQHLS 197
>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
helicase protein.
Length = 1037
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 510 RGELTVLTGPTGCGKTTLCAEI 575
+G+ T++T PTG GKT + A I
Sbjct: 306 QGKNTIVTAPTGSGKTVIAANI 327
>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
helicase protein 1 protein.
Length = 1037
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 510 RGELTVLTGPTGCGKTTLCAEI 575
+G+ T++T PTG GKT + A I
Sbjct: 306 QGKNTIVTAPTGSGKTVIAANI 327
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
protein F52B5.3 protein.
Length = 1425
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 519 LTVLTGPTGCGKTTLCAEISLDLAQQ 596
+ +++G TGCGKTT + LD A +
Sbjct: 199 VVIISGGTGCGKTTQVPQFILDEAHE 224
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTL 563
L R+ G + GE+ L G +G GKTTL
Sbjct: 57 LNRVSGIAKPGEMVALMGASGAGKTTL 83
>AC006774-8|AAY43992.1| 295|Caenorhabditis elegans Hypothetical
protein Y46H3A.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 306 LVTATEAAGAGLSLKTLVSDAKPAAHRSITTFAALRDDVYAELTNIDKV 452
L+ A+ A S + V + PAA S F +R VY +L +DKV
Sbjct: 8 LLAIRSASTAVASAENAVPASVPAATLSSEFFDHIRHQVYGDLKKVDKV 56
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
K08E7.9 protein.
Length = 1321
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 513 GELTVLTGPTGCGKTTLCA 569
G+ L GP+GCGK+T+ A
Sbjct: 1105 GQTLALVGPSGCGKSTVVA 1123
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical protein
F42E11.1 protein.
Length = 1266
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 513 GELTVLTGPTGCGKTT 560
GE L GP+GCGK+T
Sbjct: 1055 GETVALVGPSGCGKST 1070
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 513 GELTVLTGPTGCGKTTLCA 569
G+ L GP+GCGK+T+ A
Sbjct: 1105 GQTLALVGPSGCGKSTVVA 1123
>Z98866-7|CAB11549.1| 454|Caenorhabditis elegans Hypothetical
protein Y49E10.9 protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 483 LTRLLGGHRRGELTVLTGPTGCGKTTL 563
L ++ G GELT + G +G GKTTL
Sbjct: 122 LDKVNGRALAGELTFIMGSSGAGKTTL 148
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 525 VLTGPTGCGKTTLCAEISLDLAQQGINTLWGQF 623
++ GP GCGKT L ++ + A I + +F
Sbjct: 199 LMYGPPGCGKTMLAKAVAANTAASFIRVVGSEF 231
>U00043-12|AAC77504.2| 613|Caenorhabditis elegans Hypothetical
protein T26A5.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 450 VRGVKWRRFPALTRLLGGHRRGELTVLTGPTGCGKTTL 563
V +K +R L + G + GEL L G +G GKTTL
Sbjct: 41 VTTIKEKRL-LLKNVSGYAKSGELLALMGASGAGKTTL 77
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 357 VSDAKPAAHRSITTFAALRDDVYAELTNIDKVRG-VKWRRFPALTRL-----LGGHRRGE 518
+S +PAA R FA + D + ++ + +VR ++W + R LG R +
Sbjct: 512 LSTIQPAAKRE--GFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQ 569
Query: 519 LTVLTGPTGCGKTTLCAEIS 578
+L GP GCGKT L ++
Sbjct: 570 GILLCGPPGCGKTLLAKAVA 589
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +3
Query: 357 VSDAKPAAHRSITTFAALRDDVYAELTNIDKVRG-VKWRRFPALTRL-----LGGHRRGE 518
+S +PAA R FA + D + ++ + +VR ++W + R LG R +
Sbjct: 512 LSTIQPAAKRE--GFATVPDVSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQ 569
Query: 519 LTVLTGPTGCGKTTLCAEIS 578
+L GP GCGKT L ++
Sbjct: 570 GILLCGPPGCGKTLLAKAVA 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,277
Number of Sequences: 27780
Number of extensions: 319466
Number of successful extensions: 931
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -