Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2052
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    30   0.27 
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   3.4  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   3.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 424 LNKTFFLIRNEFWXLLLALFICM---WIFV 504
           L K FF+++NEF   L   +IC    WIFV
Sbjct: 147 LQKNFFMVKNEFLYRLSPSYICSIIDWIFV 176


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 272 HFNLFIEKSLNYGFYNTSVKPYSINLNHFC 183
           HF+  I+    +   N+  +PY+ +L+H C
Sbjct: 74  HFDTVIDIGCFHSILNSDHEPYTASLSHIC 103


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 272 HFNLFIEKSLNYGFYNTSVKPYSINLNHFC 183
           HF+  I+    +   N+  +PY+ +L+H C
Sbjct: 74  HFDTVIDIGCFHSILNSDHEPYTASLSHIC 103


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 521 GLATSGTKIH-IHINSAKSRXQNSFLIKKNVLFXLIKSI 408
           G+  S  KIH +++N  KSR Q       N+   +IKSI
Sbjct: 639 GINCSIDKIHSLYLNDKKSRSQGMRKFDLNLELLMIKSI 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,495
Number of Sequences: 5004
Number of extensions: 37202
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)