Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2052
         (570 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018136-1|AAH18136.1|  959|Homo sapiens GTF2I repeat domain con...    29   8.7  
AY648295-1|AAT68469.1|  976|Homo sapiens GTF2I repeat domain con...    29   8.7  
AF156489-1|AAF17358.1|  944|Homo sapiens putative transcription ...    29   8.7  
AF151354-1|AAF19786.1|  959|Homo sapiens general transcription f...    29   8.7  
AF118270-1|AAD14687.2|  944|Homo sapiens muscle TFII-I repeat do...    29   8.7  
AF104923-1|AAD27668.1|  944|Homo sapiens putative transcription ...    29   8.7  
AF089107-1|AAF21796.1|  959|Homo sapiens RBAP2 protein.                29   8.7  
AC004851-2|AAS00361.1|  788|Homo sapiens unknown protein.              29   8.7  
AC004851-1|AAS00362.1|  773|Homo sapiens unknown protein.              29   8.7  
AB209389-1|BAD92626.1|  967|Homo sapiens GTF2I repeat domain con...    29   8.7  

>BC018136-1|AAH18136.1|  959|Homo sapiens GTF2I repeat domain
           containing 1 protein.
          Length = 959

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AY648295-1|AAT68469.1|  976|Homo sapiens GTF2I repeat domain
           containing protein 1 protein.
          Length = 976

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AF156489-1|AAF17358.1|  944|Homo sapiens putative transcription
           factor protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AF151354-1|AAF19786.1|  959|Homo sapiens general transcription
           factor 3 protein.
          Length = 959

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AF118270-1|AAD14687.2|  944|Homo sapiens muscle TFII-I repeat
           domain-containing protein 1 protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AF104923-1|AAD27668.1|  944|Homo sapiens putative transcription
           factor protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AF089107-1|AAF21796.1|  959|Homo sapiens RBAP2 protein.
          Length = 959

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AC004851-2|AAS00361.1|  788|Homo sapiens unknown protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AC004851-1|AAS00362.1|  773|Homo sapiens unknown protein.
          Length = 773

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 20  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 79

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 80  LQSDFLR 86


>AB209389-1|BAD92626.1|  967|Homo sapiens GTF2I repeat domain
           containing 1 isoform 2 variant protein.
          Length = 967

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
 Frame = +1

Query: 25  WSSDSRKRDNIALSVTXPLAS*HS----LNANIICVAVH--TAFIL---EQRSYLN*FRQ 177
           W+S   ++D I  S+   L S  S    LNA + CVAVH  +AF++   + R +LN  ++
Sbjct: 27  WNSAFTRKDEIITSLVSALDSMCSALSKLNAEVACVAVHDESAFVVGTEKGRMFLNARKE 86

Query: 178 ISQK*LR 198
           +    LR
Sbjct: 87  LQSDFLR 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,416,109
Number of Sequences: 237096
Number of extensions: 1130122
Number of successful extensions: 1344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)