Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2052
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    27   9.5  

>U67953-2|AAL13327.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC13.1a protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = -3

Query: 451 SLSRKMFYXXXXXXXXXXX*ISFKQNLNQSSFCNETKWKCIYVFEVIRFFKRCCQFYKDS 272
           S  RK+              + F   L    F N      IY F +  F  +  + Y+ S
Sbjct: 250 SFKRKVLQLLEYCSQLYRCALPFGPWLRHFLFSNPGSGVMIYFFSISYFSLKVGEVYRYS 309

Query: 271 ISIYLLKNH*IMVFITQVLSHILL 200
           +S+     + + VF++ VLS ++L
Sbjct: 310 LSVKKSVGNLLTVFVSYVLSKLIL 333


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 314 YFKYVYAFPFSLVTERALIQILFERYLQF 400
           YFKY   FP S++    L  IL ++Y+ F
Sbjct: 116 YFKYHRKFPISIIVILTLTYILVDQYVTF 144


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 129 YCIYIGTTQLSQLVSSDITKVIK-VNRIWLNTCVIKTII 242
           +CI+IG T  S+L  +D++K  K ++R  L    I+T I
Sbjct: 215 FCIWIGWTIQSKLKVADMSKTTKRMHRNLLKALAIQTFI 253


>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 391 FTVCELIDLIXLNKTFFLIRNEFW 462
           FT   ++DLI LNKT     N FW
Sbjct: 120 FTKATILDLIPLNKTVIEGSNVFW 143


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 214 SHILLTLITFVISDETN 164
           SH+L+T+ TF+IS++ N
Sbjct: 96  SHLLMTIFTFLISEQVN 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,544
Number of Sequences: 27780
Number of extensions: 203751
Number of successful extensions: 377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)