Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2051
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   3.4  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   7.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   7.9  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 223 LKLLINTASLKNVSDYVEVLELAADLMLCWXLXMHFATLNF 345
           + +L+NT  +  VS++     +   + LC+ L   F+T+ F
Sbjct: 353 VSILLNTILVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQF 393


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 51  GENGMALVQVRDVMHHMLQ 107
           G NG+A+V + D +H  LQ
Sbjct: 575 GSNGLAIVSIIDELHKSLQ 593


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 289 QAPTPPHNHSHSSGW 245
           Q+PT P N  HSS W
Sbjct: 40  QSPTKPLNFFHSSRW 54


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 232  LINTASLKNVSDYVEVLELAADLM 303
            L+N A+L ++S+  ++L+ AADL+
Sbjct: 1041 LVNDAALNSLSNRQQLLDEAADLI 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,089
Number of Sequences: 5004
Number of extensions: 9896
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)