Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2051
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0103 + 31661707-31662798,31662806-31662833,31663632-316637...    30   0.44 
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    27   4.1  
08_01_0424 - 3746663-3746745,3747273-3747558,3747732-3748451           26   7.2  

>03_06_0103 +
           31661707-31662798,31662806-31662833,31663632-31663721,
           31664725-31664789,31664864-31664980
          Length = 463

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 SAPGPTETPPSWLKLLINTASLKNVSDYVEV 279
           S PG T +P  W+ L+      K +S++VEV
Sbjct: 170 STPGETSSPMKWVNLIATGKGQKAISNWVEV 200


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 292 QQAPTPPHNHSHSS 251
           QQ P PPH+H HS+
Sbjct: 325 QQHPPPPHHHHHSA 338


>08_01_0424 - 3746663-3746745,3747273-3747558,3747732-3748451
          Length = 362

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 TALLAQAANQYSQPEECE*LCGGVGACCR 296
           TA  A A++   QP + E  CG    CCR
Sbjct: 111 TARAAAASSDVRQPHDREGCCGCCCCCCR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,161,143
Number of Sequences: 37544
Number of extensions: 90797
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)