Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2049
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0243 + 1872229-1872446,1872745-1872842,1872991-1873073,187...    30   2.0  
11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    28   6.2  

>11_01_0243 +
           1872229-1872446,1872745-1872842,1872991-1873073,
           1873163-1873289,1873623-1873686,1873802-1873899,
           1873981-1874065,1874179-1874302,1874608-1874709,
           1874821-1874934,1875325-1875389,1875891-1875972,
           1876069-1876152
          Length = 447

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 373 LEPRSIKMSCDKGTQNDKTFTEHKPAVSTDYSTFSKLLPSYDGSSRTLVFY 525
           L P  + + C  G      F+  K +VS  Y+T + +L   +GS++  V++
Sbjct: 367 LWPEQVDLDCSNGKNTIGLFSHRKLSVSVGYATAAFVLAVLEGSTQPGVWF 417


>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 305 YCYKHTLCKYT*LVXDFFSFLAISNLALLKCLATKGLRMIKPLLSINQRCLPIIPRSL 478
           YCYK +   Y         F    ++   KC+  +GL   K L+ IN+R L I  R L
Sbjct: 233 YCYKESCSHYDFGDCCCEGFEPCYDIKDHKCMRLEGLSEAKTLVLINERRLFIFKRDL 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,558
Number of Sequences: 37544
Number of extensions: 237283
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)