Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2049
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    29   4.2  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 257 FLILHTQHCGVLSMNWYCYKHTLCKYT*LVXDFFSFLAISNLALLKCLATKGLRMI 424
           ++I++      LS+N+Y    TLC    L+  F  F+  S+  +  CL +  L  I
Sbjct: 106 YVIVYPGKYAKLSINYYYLMVTLCALISLLVTFCKFVFYSDEVVTNCLLSTALHGI 161


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
           protein F56H1.3 protein.
          Length = 1174

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 400 CDKGTQNDKTFTEHKPAVSTDYSTFSKLLPSYDGSSRTLVFYID 531
           C  G  +D+T  ++   +   ++TF + + SY G+S+ +  + D
Sbjct: 553 CISGDSSDRTLLKYVYKLQKAHNTFFESVTSYSGTSKPMFTFND 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,185,347
Number of Sequences: 27780
Number of extensions: 232924
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)