Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2047
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579...    28   1.9  
10_02_0186 + 6399245-6399414,6444721-6444783,6444913-6445026,644...    27   3.4  
07_01_0334 - 2370936-2371334                                           26   7.7  
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334     26   7.7  

>01_01_0749 -
           5794140-5794346,5795445-5795558,5795856-5796008,
           5796124-5796207,5796262-5796399,5796500-5796598
          Length = 264

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 255 GTRPRGGAETTXLHVAQLRAPPPRVQEQHVARR 353
           G   +GG   + LH A   AP P +Q   V RR
Sbjct: 29  GPCAKGGGAASTLHAATRGAPAPSIQAPSVVRR 61


>10_02_0186 +
           6399245-6399414,6444721-6444783,6444913-6445026,
           6445124-6445364,6446002-6446202,6446244-6446395,
           6446539-6446689
          Length = 363

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 151 QLPLTESLADAVTVYPIMDTHRFYX--IHAYISRVFLERDHEEVLKLRXYMW 300
           Q+ LT+ + DA      + T+RF+   IH       LER   + LKL+ ++W
Sbjct: 19  QMLLTKVVVDAGLFVFALLTYRFFLGTIHVLPLAFILERGKLKELKLKAFIW 70


>07_01_0334 - 2370936-2371334
          Length = 132

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 LHVAQLRAPPPRVQEQ 338
           LH+ + R PPPR Q+Q
Sbjct: 30  LHLGEFRMPPPRQQQQ 45


>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
          Length = 554

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 297 VAQLRAPPPRVQEQHVARR 353
           ++ ++APPP+VQ+ H+  R
Sbjct: 170 LSAMKAPPPKVQQSHIPIR 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,250,737
Number of Sequences: 37544
Number of extensions: 111136
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)