Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2047
(360 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC023531-1|AAH23531.1| 775|Homo sapiens chondroitin polymerizin... 45 6e-05
BC021223-1|AAH21223.2| 775|Homo sapiens chondroitin polymerizin... 45 6e-05
AY358403-1|AAQ88769.1| 775|Homo sapiens RASL651 protein. 45 6e-05
AB095813-1|BAC78393.1| 775|Homo sapiens chondroitin polymerizin... 45 6e-05
AB086063-1|BAC81536.1| 775|Homo sapiens chondroitin sulfate syn... 45 6e-05
BC064509-1|AAH64509.1| 666|Homo sapiens CSGlcA-T protein protein. 41 0.001
AY358407-1|AAQ88773.1| 772|Homo sapiens RLSS299 protein. 41 0.001
AB037823-1|BAA92640.1| 788|Homo sapiens KIAA1402 protein protein. 41 0.001
>BC023531-1|AAH23531.1| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTES---LADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
+G HYS + + + P+ E A+T +P+ D Y +H +R LER ++E+ +
Sbjct: 296 EGVHYSHLELSPGE-PVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + S G R + WP G+
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGI 379
>BC021223-1|AAH21223.2| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTES---LADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
+G HYS + + + P+ E A+T +P+ D Y +H +R LER ++E+ +
Sbjct: 296 EGVHYSHLELSPGE-PVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + S G R + WP G+
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGI 379
>AY358403-1|AAQ88769.1| 775|Homo sapiens RASL651 protein.
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTES---LADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
+G HYS + + + P+ E A+T +P+ D Y +H +R LER ++E+ +
Sbjct: 296 EGVHYSHLELSPGE-PVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + S G R + WP G+
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGI 379
>AB095813-1|BAC78393.1| 775|Homo sapiens chondroitin polymerizing
factor protein.
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTES---LADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
+G HYS + + + P+ E A+T +P+ D Y +H +R LER ++E+ +
Sbjct: 296 EGVHYSHLELSPGE-PVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + S G R + WP G+
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGI 379
>AB086063-1|BAC81536.1| 775|Homo sapiens chondroitin sulfate
synthase protein.
Length = 775
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTES---LADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
+G HYS + + + P+ E A+T +P+ D Y +H +R LER ++E+ +
Sbjct: 296 EGVHYSHLELSPGE-PVQEGDPHFRSALTAHPVRDPVHMYQLHKAFARAELERTYQEIQE 354
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + S G R + WP G+
Sbjct: 355 LQWEIQNTSHLAVDGDRAAAWPVGI 379
>BC064509-1|AAH64509.1| 666|Homo sapiens CSGlcA-T protein protein.
Length = 666
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTE---SLADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
QG+ Y S + ++ P E + A V+P+ + Y +H S + LER + E+ +
Sbjct: 276 QGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQ 335
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + + P G +WP GL
Sbjct: 336 LQAQIRNLTVLTPEGEAGLSWPVGL 360
>AY358407-1|AAQ88773.1| 772|Homo sapiens RLSS299 protein.
Length = 772
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTE---SLADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
QG+ Y S + ++ P E + A V+P+ + Y +H S + LER + E+ +
Sbjct: 276 QGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQ 335
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + + P G +WP GL
Sbjct: 336 LQAQIRNLTVLTPEGEAGLSWPVGL 360
>AB037823-1|BAA92640.1| 788|Homo sapiens KIAA1402 protein protein.
Length = 788
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 112 QGEHYSSVVIENDQLPLTE---SLADAVTVYPIMDTHRFYXIHAYISRVFLERDHEEVLK 282
QG+ Y S + ++ P E + A V+P+ + Y +H S + LER + E+ +
Sbjct: 292 QGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQ 351
Query: 283 LRXYMWHNSARHPPGYRNSTWPAGL 357
L+ + + + P G +WP GL
Sbjct: 352 LQAQIRNLTVLTPEGEAGLSWPVGL 376
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,238,998
Number of Sequences: 237096
Number of extensions: 615940
Number of successful extensions: 5106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5106
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -