Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2047
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical...    29   0.74 
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   5.2  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   5.2  
AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical ...    27   5.2  
U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family pr...    26   9.1  
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr...    26   9.1  
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AF016684-13|AAB66203.1|  470|Caenorhabditis elegans Hypothetical
           protein F45C12.3 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 280 KLRXYMWHNSARH--PPGYRNSTWP 348
           K R YM     RH  PPG RNS WP
Sbjct: 103 KTRQYMREYYLRHRGPPGQRNSRWP 127


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 145 NDQLPLTESLADAVTVYPIMDTHRFYXIH--AYISRVFLERDHE-EVLKLRXYMW-HNSA 312
           ND +  +E L +   +  ++   R    +  + + R     D E E  + R + W H+ A
Sbjct: 422 NDMIAKSEQLPNTDYIEVLLGARRRKRCNDLSIVGRGGFSSDKESECSRRRVFEWLHDVA 481

Query: 313 RHPPGYRNSTWPA 351
            +PP + ++ WP+
Sbjct: 482 ENPPNFLDAYWPS 494


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 103  LNVQGEHYSSVVIENDQLPLTESLADAVTV 192
            +  QG+ Y SV++ NDQ P       A+ V
Sbjct: 1909 IRTQGKQYRSVILSNDQSPTAVVTPVAIAV 1938


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 103  LNVQGEHYSSVVIENDQLPLTESLADAVTV 192
            +  QG+ Y SV++ NDQ P       A+ V
Sbjct: 1909 IRTQGKQYRSVILSNDQSPTAVVTPVAIAV 1938


>AF067607-3|AAF98607.1|  590|Caenorhabditis elegans Hypothetical
           protein C18H7.6 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 199 WDTLLQHQPKTQLMVVDHF 143
           WDTL+  QP  +++  DHF
Sbjct: 322 WDTLIFGQPNAEIIEPDHF 340


>U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family
           protein 7 protein.
          Length = 295

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 QLPLTESLADAVTVYPIMDTHR 216
           Q PL +  AD VTV P   THR
Sbjct: 236 QQPLRQMSADRVTVDPTQPTHR 257


>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical protein
            ZK688.5b protein.
          Length = 1595

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 207  HSQVLRXTRLHITGVFGTRPRGGAETTXLHVAQLRAPPPRVQ 332
            H+++LR  + HI+ V G+R    A      V Q     PR Q
Sbjct: 1206 HTELLRMVKEHISRVPGSRATRNASQNTTSVNQSTETSPREQ 1247


>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical protein
            ZK688.5a protein.
          Length = 1620

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 207  HSQVLRXTRLHITGVFGTRPRGGAETTXLHVAQLRAPPPRVQ 332
            H+++LR  + HI+ V G+R    A      V Q     PR Q
Sbjct: 1206 HTELLRMVKEHISRVPGSRATRNASQNTTSVNQSTETSPREQ 1247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,050,600
Number of Sequences: 27780
Number of extensions: 94899
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)