Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2046
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   4.3  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.5  

>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +3

Query: 369 TPCRAISNISPLPHSRLLVPRSTFF*ILLQMPCTYKRKTELKYXLXDLKKAIDDVKTKKL 548
           T  R+ ++ISP   S     + + F         YK   +    L + KKA D++  K L
Sbjct: 426 TSTRSFNDISPSSSSSYSTAQISTF--PSNQESIYKNINKRLSTLEERKKAFDEIVEKIL 483

Query: 549 SL*TYNXSKTTNFDHLMKEV 608
           +    + +K  NF  L+ E+
Sbjct: 484 TNYGKHNAKNMNFTQLLHEL 503


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 386 LEHFAVTPLPFVGTPFNFFLNIITD 460
           LE+F +T  P VGT F +F + + D
Sbjct: 81  LENFELTGRPVVGTIFKYFQSNLLD 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,804
Number of Sequences: 5004
Number of extensions: 52330
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)