Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2044
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    31   0.14 
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    30   0.24 
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    27   3.0  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    26   3.9  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    26   3.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 146  STLPRNTWPRGQVVHTYPGPDN-RVRTVDVRTSGGLLKRPASKMILLVPATSDEPTPIES 322
            ST P N  P   +   +PG    R ++  +R  G    RP S+  +L    S  P+P+  
Sbjct: 838  STSPLNASPFSVLSSDFPGSSRYRDQSSPIRFYGKADSRPVSQEAILSQDISSSPSPVLP 897

Query: 323  PRQGVGA 343
            P + V +
Sbjct: 898  PSENVAS 904


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +2

Query: 122 GDTVLIVDSTLP--RNTWPR-GQVVHTYPGPDNRVRTVDVRTSGGLLKRPASKMILLVPA 292
           G  V I + T P  R  W + G  V TYP  D + R+ D       +K      I L+ A
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187

Query: 293 TSDEPTPIESPRQ 331
            +  PT I+  R+
Sbjct: 188 CAHNPTGIDPTRE 200


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 59  YLPTLLPRKIDGRAAGEDLQCGDTVLIV 142
           YLP  L   + G A  E+L+C   +LI+
Sbjct: 199 YLPVALAMHLAGVATPENLKCAQDILII 226


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 142 HYEDGIPTLQVLASCSPVDLPG 77
           H E G+P LQV+ +C  +D  G
Sbjct: 32  HPEVGVPNLQVIKACQSLDSRG 53


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 142 HYEDGIPTLQVLASCSPVDLPG 77
           H E G+P LQV+ +C  +D  G
Sbjct: 32  HPEVGVPNLQVIKACQSLDSRG 53


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 175 RASCPHLPRPRQPCTNCRRQNERRSA*ETCLQDDPAGACN 294
           R      PRP   C NCR+ +   +   T L+  PA   N
Sbjct: 85  RCDMDQSPRPGNACINCRKHHLDCNFTRTPLKRGPAKGFN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,498
Number of Sequences: 5004
Number of extensions: 39769
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)