Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2044
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360... 31 0.75
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 30 1.3
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 30 1.3
10_08_0975 - 21978642-21979520 30 1.7
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 29 2.3
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 29 2.3
08_02_0191 + 14041201-14043894,14044354-14044632 29 4.0
03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354... 28 5.3
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 28 5.3
12_02_0799 + 23282793-23282896,23283090-23283172,23283303-232834... 28 7.0
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 28 7.0
10_01_0086 - 1064650-1065379,1065796-1065950,1066029-1066141,106... 28 7.0
12_01_0245 - 1829982-1830995 27 9.3
06_02_0106 - 11898493-11901471 27 9.3
04_03_0489 + 16503325-16503747,16503916-16503978 27 9.3
>01_05_0471 +
22535477-22535609,22535714-22535808,22535929-22536050,
22536165-22536702,22536774-22538105
Length = 739
Score = 31.1 bits (67), Expect = 0.75
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +2
Query: 86 IDGRAAGEDLQCGDTVLIVDSTLPRNTWPRGQVVHTYPGPDNRVRTVDVRTSGGLLKRPA 265
+DG G GD+ + +L RG++ P PD+ R+VD RT L RP
Sbjct: 156 VDGGCGGGGGYEGDSSI---RSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPP 212
Query: 266 SKMILLVPATSDEPTPIES 322
+ L P++S +P + S
Sbjct: 213 FRERSL-PSSSSKPVVLSS 230
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 48 GSRNTCLRCCPGRSTGEQLARTCSVGIPSS*WTPRCHATHGRAGKLSTPTQAPTT 212
G+ N +CC G+ G+ + R+CS+ P A +A P AP T
Sbjct: 229 GAVNNIPKCCDGKQGGQVITRSCSIRFEV---YPFFDAQAAKAAMSPAPAPAPVT 280
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 408 SSTYSII-MGRRRCRQHPSPSCVAPTPCRGDSMGVGSSLVAGTSRIIL 268
SSTY + G +C Q PSPSC A G S G + A T + +L
Sbjct: 148 SSTYRTVPCGSPQCAQVPSPSCPAGV---GSSCGFNLTYAASTFQAVL 192
>10_08_0975 - 21978642-21979520
Length = 292
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 384 GRRRCRQHPSPSCVAPTPCRGDSMGVGSSLVAGTSRIILEAG 259
GRRRC Q P PS + T R S G +S TSR + + G
Sbjct: 249 GRRRC-QPPDPSPLGDTHRRNLSAGGAASFGRNTSRKLADMG 289
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 212 GCRGLGRCGQLARAAMCCVAAW 147
GCRG G + RAA+CC W
Sbjct: 9 GCRGAGSEWEGVRAAVCCFLVW 30
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 200 GPDNRVRTVDVRTSGGLLKRPASKMILLVPATSDEPTPIESPRQG 334
GP R+ DV + G+ +P +VPA S P P+ +P G
Sbjct: 201 GPFGRITPADVEAAAGIEPKPK-----VVPAASAAPVPLSAPAIG 240
>08_02_0191 + 14041201-14043894,14044354-14044632
Length = 990
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 189 WTTCPRGHVLRGSVESTMRTVSPHCKSSPAALPSIFLGSSVGRYSLTHLLQK 34
W P ++GS ES R C+SS L S + ++ S H+L K
Sbjct: 712 WRFSPDSVSIQGSKESNFRVAYLMCRSSDRQLASSNIALNIQTSSSCHVLHK 763
>03_06_0136 +
31933843-31934715,31934906-31935021,31935233-31935408,
31935846-31936036,31936119-31936205,31936304-31936461,
31936555-31936765,31936856-31937005
Length = 653
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 366 QHPSPSCVAPTPCRGDSMGVGSSLVAGTSRIILEAGLLSRP 244
Q P+P+ PT + G +L AG SR + EAG+ + P
Sbjct: 50 QGPAPT---PTLLYASATGTSKALAAGLSRRLAEAGVTAHP 87
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 46 VGQGIPAYAAAQEDRRESSWRGLAVWGYRPH-SGLHAATQHMAARASC--PHLPRPRQPC 216
VGQ + A + R GL Y PH +G + + A +C P PRP C
Sbjct: 365 VGQSLVVQALSNAVLRRKI--GLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSC 422
Query: 217 TNCRRQNERRS 249
T+C N +S
Sbjct: 423 TSCIAHNLGKS 433
>12_02_0799 +
23282793-23282896,23283090-23283172,23283303-23283495,
23283618-23283756,23283844-23283894,23284274-23284439,
23284591-23284757,23284857-23285030,23285120-23285215,
23285288-23285425,23285525-23285844,23285924-23286188,
23286332-23286575,23288025-23288106,23288189-23288366
Length = 799
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 385 GATPLSPTSLPXVRSTDSLSWRLYGRGLVARCRHQQDHLGGRSLKQTAARSDVDSSYTVV 206
G TP++ L +RS +S R Y + RH + LGGR +T +S+Y
Sbjct: 671 GGTPVA--ELKGIRSP-CISERAYSP-CITELRHDRSPLGGRGSPRTGTCQLSESTYRTS 726
Query: 205 GAWVGVDNL 179
A V NL
Sbjct: 727 TADFSVSNL 735
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 268 GGRSLKQTAARSDVDSSYTVVGAWVGVDNLPARPCVAWQRGV 143
G R+L+ VD+ + GAW LP CV GV
Sbjct: 255 GARALEAHVCAGSVDALHVASGAWARPRALPGGGCVVGACGV 296
>10_01_0086 -
1064650-1065379,1065796-1065950,1066029-1066141,
1066238-1066345,1066773-1066890,1066996-1067069,
1067595-1067690,1068062-1068455
Length = 595
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 55 GIPAYAAAQEDRRESSWRGLAVWGYRPHSGLHAATQHMAARASCPHLPRPRQP 213
G A AAA + RR L + Y P + + A H AAR P P P +P
Sbjct: 63 GFDAVAAAVQRRRHHWAPVLHLQHYFPVTEVALALHHAAARQGPPPPPPPPRP 115
>12_01_0245 - 1829982-1830995
Length = 337
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 101 AGEDLQCGDTVLIVDSTLPRNTWPRGQVV 187
+G ++ T+ IVDST+P NT+ R VV
Sbjct: 269 SGLEVNRSGTITIVDSTVPNNTFFRRGVV 297
>06_02_0106 - 11898493-11901471
Length = 992
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -2
Query: 304 LVARCRHQQDHLGGRSLKQTAARSDVDSSYTVVGA 200
++++CRH +D G+S+ A RS ++ + +V+ A
Sbjct: 451 VISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNA 485
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 240 AAVCLRDLPPR*SCWCLQRATSPRP 314
AA CLR L + CL+RA +PRP
Sbjct: 51 AAACLRRLRTPATAACLRRAGNPRP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,057
Number of Sequences: 37544
Number of extensions: 377655
Number of successful extensions: 1575
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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