Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2041
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 74 3e-14
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 27 2.2
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 27 3.8
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 3.8
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 5.1
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 6.7
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 8.9
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 25 8.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.9
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 8.9
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 73.7 bits (173), Expect = 3e-14
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Frame = +3
Query: 183 LEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISF---WDVQA 353
L K V+P Y L L P L+ Y G V + L L++S+ ++LH + ++ W Q
Sbjct: 20 LPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQT 79
Query: 354 YPASDAEHPVERVVVKELRMDVKKPILTLYFEKPIPKGTEGHIELTYRGNIHMGVTEGFF 533
AS+ + ER+V L F +P + + L + I G+ EGF+
Sbjct: 80 VWASEVSYGDERIV--------------LQFPSTVPANSVAVLTLPFTARISSGM-EGFY 124
Query: 534 KSTYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGIQ 644
+S+Y G +A TQ+ P +ARR FPC+DEP ++
Sbjct: 125 RSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEPALK 161
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 27.5 bits (58), Expect = 2.2
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Frame = +3
Query: 345 VQAYPASDAEHPVERVVVKELRMDVKK---PILTLY---FEKPIPKGTEGHIELTYRGNI 506
+ A+ +D P + V+V + + + PI+ + +K I G G + Y GN
Sbjct: 96 IYAFSQADENEPPQFVLVTTHKFSINESPYPIIAVSQSPIDKTIACGFGGGLVSCYHGNP 155
Query: 507 --HMGVTEGFFKS--------TYTTDQGEEIMVAATQLRPNNARRMFPCFDEPGIQDPVR 656
G+ + + TY DQ + +A T + + + C D G+
Sbjct: 156 LRERGIKNSYSHNLGEPITGLTYLDDQSSVLFIATTNKTYSLSGKSLSCLDNTGVSLNCS 215
Query: 657 NQRSTTP 677
+ TTP
Sbjct: 216 SSCKTTP 222
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 97 HRKRYRLVTLSKHEASTSITHMGSLWKPVWRRSWSRLDISW 219
H++ Y + +L KH A S + K V SW ++ W
Sbjct: 219 HQEGYPVTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYW 259
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 596 WTKLCGCYHNLFTLICRVRRFEESLGD 516
W+ +CGCY N +T C E+ + D
Sbjct: 229 WSTVCGCYKNTYT--CSQTCLEDEVQD 253
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 279 WLQESDELSLHCDHELGISFWDVQAYPAS--DAEHPVERVVVKE 404
++ +S E + GI FWD YP +E P+ V +K+
Sbjct: 463 YISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKD 506
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 410 YGRQKADIDFVFRKADPQGNRRSYRVDVSRQYS 508
Y +KA+ V A N RSY VSR YS
Sbjct: 20 YKNEKAEPTQVLDAAKANKNTRSYPYSVSRNYS 52
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 423 KPILTLYFEKPIPKGTEGHIELTYRGNIH 509
K I L PIP+G + EL+Y+ N H
Sbjct: 77 KHISKLPIASPIPRGLDRSGELSYKDNNH 105
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 162 GLAMETRLEKIVEPTGYKLDLEPFLDDGVYRG 257
G+A T L KIV+ G KLD+ D GV G
Sbjct: 309 GVASLTMLPKIVDAVGDKLDV--LFDSGVRSG 338
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 468 TEGHIELTYRGNIHMGVTEGFFKSTYTTDQGEEIMVAATQLRPNNARRMFP 620
T + T +IH +T GF+ +T+TT + T + +N+ +FP
Sbjct: 154 TTSFVPTTTESSIHP-ITTGFYNTTFTTGY---FNTSVTSVAVHNSTTVFP 200
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +3
Query: 639 IQDPVRNQRSTTPEHGXPSXI----LRSREPR 722
+Q P + RS+TP G P I +++REP+
Sbjct: 9 VQPPPNDSRSSTPATGPPPPIPKIKIKTREPK 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,304
Number of Sequences: 5004
Number of extensions: 68212
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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