Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2040
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    27   2.9  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   6.7  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   8.8  

>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 28  EMLEMLLVDHKETFTNVFYNSALDDSDKIAYAYKN 132
           E  E ++ +  E  TNVFY S  DD + +   Y+N
Sbjct: 91  EEFENVVKNGHEASTNVFYESDGDDEEFVNEEYEN 125


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 46  LVDHKETFTNVFYNSALDDSDKIAYAYKNISMINNV 153
           L+   + F +V+ N+  D+S++  Y   N+S I  V
Sbjct: 874 LLAFADAFNDVYDNAIFDESNQFKYGLINLSGIERV 909


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +1

Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFLK---NETCKLLSAAEFGGN 387
           KI++    ++++  +        GN T+  HL D+M  C L+    E+ K L   E    
Sbjct: 474 KINKTVKIMSNSQRRSCQSVLSEGNRTILLHLADQMNACSLQTKSRESIKTLKLIEEKDE 533

Query: 388 XGPREAAGPAPLYVG 432
               E AG     VG
Sbjct: 534 YWEPETAGYFNTIVG 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,865
Number of Sequences: 5004
Number of extensions: 41884
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)