Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2040
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151...    31   0.97 
05_04_0433 - 21181713-21183998                                         29   3.9  
01_05_0523 - 22915390-22915901,22916496-22916619,22916708-229168...    27   9.1  

>06_01_0195 +
           1512978-1513207,1513938-1513945,1514040-1514197,
           1514990-1515097
          Length = 167

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 515 LLSXSCVPVSKASRCPANTGATVFQEVT-PTYSGAGPAASRGPSLP 381
           LLS S V  S+     A TG  V  +   PT SGA P+A+  PS P
Sbjct: 17  LLSNSPVSQSRGENVFAVTGPPVTADAALPTSSGAAPSANSQPSRP 62


>05_04_0433 - 21181713-21183998
          Length = 761

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 488 SKASRCPANTGATVF----QEVTPTYSGAGPAASRGPSLPPNSAADNNLHVSFFRKQYSI 321
           S+A R     G T+       V  TYS  GP+AS    L P+  A  +L ++ + +  S+
Sbjct: 457 SRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLILASWPENVSV 516

Query: 320 SS 315
           S+
Sbjct: 517 ST 518


>01_05_0523 -
           22915390-22915901,22916496-22916619,22916708-22916844,
           22917383-22917518,22917614-22917951,22919426-22919663
          Length = 494

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 437 VTPTYSGAGPAASRGPSLPPNSAADNNLHVSFFRKQYSISSTKCA 303
           V P  SG+  +++ G S+ P+S     L ++F  ++++ +  KCA
Sbjct: 93  VQPMASGSTTSSNTG-SISPSSIVGEELKLAFQLRRFTFNELKCA 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,731
Number of Sequences: 37544
Number of extensions: 292657
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)