Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2040
(620 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87442-1|BAA13383.1| 708|Homo sapiens KIAA0253 protein. 40 0.009
BC047621-1|AAH47621.1| 689|Homo sapiens NCSTN protein protein. 40 0.009
AY359120-1|AAQ89478.1| 709|Homo sapiens ATAG1874 protein. 40 0.009
AL445230-10|CAI15013.1| 274|Homo sapiens nicastrin protein. 40 0.009
AL445230-7|CAI15010.1| 689|Homo sapiens nicastrin protein. 40 0.009
AL445230-6|CAI15009.1| 709|Homo sapiens nicastrin protein. 40 0.009
AF240468-1|AAG11412.1| 709|Homo sapiens nicastrin protein. 40 0.009
BC014967-1|AAH14967.1| 290|Homo sapiens CBX4 protein protein. 30 5.7
AY390430-1|AAQ97596.1| 290|Homo sapiens NS5ATP1-binding protein... 30 5.7
AK075138-1|BAC11428.1| 462|Homo sapiens protein ( Homo sapiens ... 30 5.7
AF253321-1|AAF64523.1| 716|Homo sapiens cervical mucin MUC5B pr... 30 5.7
AF013956-1|AAB80718.1| 558|Homo sapiens Polycomb 2 homolog prot... 30 5.7
>D87442-1|BAA13383.1| 708|Homo sapiens KIAA0253 protein.
Length = 708
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 438 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 484
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 485 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 525
>BC047621-1|AAH47621.1| 689|Homo sapiens NCSTN protein protein.
Length = 689
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 419 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 465
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 466 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 506
>AY359120-1|AAQ89478.1| 709|Homo sapiens ATAG1874 protein.
Length = 709
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 439 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 485
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 486 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 526
>AL445230-10|CAI15013.1| 274|Homo sapiens nicastrin protein.
Length = 274
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 115 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 161
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 162 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 202
>AL445230-7|CAI15010.1| 689|Homo sapiens nicastrin protein.
Length = 689
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 419 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 465
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 466 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 506
>AL445230-6|CAI15009.1| 709|Homo sapiens nicastrin protein.
Length = 709
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 439 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 485
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 486 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 526
>AF240468-1|AAG11412.1| 709|Homo sapiens nicastrin protein.
Length = 709
Score = 39.5 bits (88), Expect = 0.009
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1
Query: 40 MLLVDHKETFTNVFYNSALDDSDKIAYAYKN-ISMINNVTFISTAELIADGLMKETDTQV 216
++L DH F N +Y S D ++ I +Y +S ++ F+ TDT
Sbjct: 439 VVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV-------------TDTAK 485
Query: 217 KISRLATALAHALYQRVVGEAYTGNITVSAHLVDEMLYCFL 339
++ +AT L ALY+ G ++ + V +LY FL
Sbjct: 486 ALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFL 526
>BC014967-1|AAH14967.1| 290|Homo sapiens CBX4 protein protein.
Length = 290
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 500 CVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSA 369
C+ + R P T TPT G PAA R LPP +A
Sbjct: 143 CLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAA 186
>AY390430-1|AAQ97596.1| 290|Homo sapiens NS5ATP1-binding protein 16
protein.
Length = 290
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 500 CVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSA 369
C+ + R P T TPT G PAA R LPP +A
Sbjct: 143 CLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAA 186
>AK075138-1|BAC11428.1| 462|Homo sapiens protein ( Homo sapiens
cDNA FLJ90657 fis, clone PLACE1004648, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 462
Score = 30.3 bits (65), Expect = 5.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 515 LLSXSCVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGP 390
+L + V S AS P G T Q +TP+ + A+S GP
Sbjct: 104 VLIATSVETSAASGSPEGAGMTTVQTITPSRASESSASSDGP 145
>AF253321-1|AAF64523.1| 716|Homo sapiens cervical mucin MUC5B
protein.
Length = 716
Score = 30.3 bits (65), Expect = 5.7
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -1
Query: 494 PVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSAADNNLH-VSFFRKQYSIS 318
P + S PA T T Q TP S P++SR PP+ H + R + +
Sbjct: 134 PSTGTSHTPAATTGTT-QHSTPALSSPHPSSSRTTESPPSPGTTTPGHTTATSRTTATAT 192
Query: 317 STKCADTVILPVYASPTT 264
+K + +LP +SPT+
Sbjct: 193 PSKTRTSTLLP--SSPTS 208
>AF013956-1|AAB80718.1| 558|Homo sapiens Polycomb 2 homolog
protein.
Length = 558
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 500 CVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSA 369
C+ + R P T TPT G PAA R LPP +A
Sbjct: 411 CLSETHGEREPCKKRLTARSISTPTCLGGSPAAERPADLPPAAA 454
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,465,745
Number of Sequences: 237096
Number of extensions: 1639703
Number of successful extensions: 3818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3814
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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