Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2040
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    28   6.2  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   8.2  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   8.2  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    27   8.2  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    27   8.2  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   8.2  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 228 PRYLYLSVSFFHQTICYEFS 169
           P+Y+ LSV F H  +CY+ +
Sbjct: 2   PKYVALSVDFQHPNVCYQLT 21


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 177 EFSCGYKCNIVDHTDVFIGIS 115
           E  CG KC +VD+  VF  IS
Sbjct: 556 EKDCGGKCELVDYKSVFYNIS 576


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 515 LLSXSCVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSA 369
           L+S    P+S ++  P N  ATV Q    +   +    SR   +PPN++
Sbjct: 188 LISGKAGPMSPSTGSPINVAATVLQNAVSSPQHSIFDRSRLNKIPPNTS 236


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 515 LLSXSCVPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPPNSA 369
           L+S    P+S ++  P N  ATV Q    +   +    SR   +PPN++
Sbjct: 188 LISGKAGPMSPSTGSPINVAATVLQNAVSSPQHSIFDRSRLNKIPPNTS 236


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 470 PANTGATVFQEVTPTYSGAGPAASRGPSLPPNSAAD 363
           P N GA    +VT T    GPA + GP  PP  A +
Sbjct: 218 PGNPGAP--GQVTETPGTPGPAGAAGPPGPPGPAGN 251


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 497 VPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPP 378
           VPV  A+  P +  ++ F+ +TPT+  +G + S  P +PP
Sbjct: 336 VPV--ATYRPGDPISSHFEYITPTFRFSGNSLSYNPPMPP 373


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 497 VPVSKASRCPANTGATVFQEVTPTYSGAGPAASRGPSLPP 378
           VPV  A+  P +  ++ F+ +TPT+  +G + S  P +PP
Sbjct: 238 VPV--ATYRPGDPISSHFEYITPTFRFSGNSLSYNPPMPP 275


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 470 PANTGATVFQEVTPTYSGAGPAASRGPSLPPNSAAD 363
           P N GA    +VT T    GPA + GP  PP  A +
Sbjct: 228 PGNPGAP--GQVTETPGTPGPAGAAGPPGPPGPAGN 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,641
Number of Sequences: 27780
Number of extensions: 249645
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)