Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2039
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    35   0.009
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    28   1.0  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    28   1.0  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   1.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   4.2  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    25   7.3  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 228 FRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFRSSLCT 359
           ++I R  G  E    AE+EL  T  ++ W +PPIS+ F   + T
Sbjct: 365 WKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFT 408


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 386 KVFEPKLNYSDHDVIKWVRYIGRSG 460
           K+ EPKLNY     + WVRY+ ++G
Sbjct: 398 KITEPKLNY---HAMPWVRYVTQNG 419


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 502 YSPSPRRSAPGLVESGASDVAHPLDDVMVRVIQLRFEHLP 383
           + PSP+      V  G+  ++  L+D+ ++ I   FE LP
Sbjct: 164 FPPSPKVDTSNTVSPGSKPISEDLEDLNLQSIVQTFEDLP 203


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 219  LKMFRIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFRSSL 353
            L+ +RI+R+  +KE  +  E E L T   + W R P     R +L
Sbjct: 1441 LEAYRIERINVIKEEVVRQEKEALNTFGNEFWKRDPTIAPIRGAL 1485


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 279 IELLETDTKKKWTRPPISMGFRSSLCTLRIQGSL 380
           ++L      K W R P     + S+CTL   GSL
Sbjct: 3   VQLKLDPNSKNWLRQPDQQPIQDSICTLPGPGSL 36


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 377 ATWKVFEPKLNYSDHDVIKWVRYIGR 454
           A W VF   L Y D  V+++V+Y+ R
Sbjct: 474 AAWNVFS--LVYRDEGVLQFVKYVSR 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,552
Number of Sequences: 5004
Number of extensions: 47855
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)