Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2039
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    43   2e-04
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    29   4.3  
07_03_1124 + 24157441-24157483,24157989-24158020,24158135-241583...    28   5.7  
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    28   7.6  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 225 MFRIKRMAGMKETQLSAEIELLET-DTKKKWTRPPISMGFRSSLCT 359
           +++I++  G  E  +SAE+EL+ T   KK W RPPI M F+  + T
Sbjct: 357 VWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFT 402



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 413 SDHDVIKWVRYIGRSGLYE 469
           S ++ ++WVRYI R+G YE
Sbjct: 417 SGYNTVEWVRYITRAGSYE 435


>09_04_0496 + 18079905-18081586,18084825-18084868,18086396-18086502,
            18087069-18087674,18087789-18088013,18088102-18088167,
            18088268-18088336,18088511-18088582,18088672-18088848,
            18089978-18090115
          Length = 1061

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 496  PSPRRSAPGLVESGASDVAHPLDDVMVRVIQLRFEHLPGSE 374
            P  + S PGL+  G + +A+P  DV  R+IQ +     GS+
Sbjct: 978  PQLQLSQPGLIHGGTAGMANP--DVFRRIIQAQLGAKDGSQ 1016


>07_03_1124 +
           24157441-24157483,24157989-24158020,24158135-24158353,
           24158553-24158634,24158726-24158898
          Length = 182

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 442 LHRTLRTLRDQVLNDAATVSTNWL 513
           LHR     RDQ LNDA  +   WL
Sbjct: 110 LHRGGHLCRDQSLNDAEAIEAGWL 133


>01_06_0230 +
           27718840-27720188,27720983-27721174,27721488-27721569,
           27721651-27721839,27721964-27722077,27722470-27722560,
           27722632-27722789,27723401-27723826,27724355-27724727,
           27725075-27725238
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +2

Query: 353 LHPPDSRFATWKVFEPKLNYSDHDVIKWVRYIGRSG 460
           ++ P+ +F+   + + K+ +SDH +++ V+ +GR G
Sbjct: 456 VNTPEWKFSKM-IHDAKIKFSDHSILRVVQILGRYG 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,220
Number of Sequences: 37544
Number of extensions: 330512
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)